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Catalog Document and entries

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Presentation on theme: "Catalog Document and entries"— Presentation transcript:

1 Catalog Document and entries

2 Scope of this effort Implement some catalog requirements using existing / draft resources Uncover gaps to decide approach: Which resources to use Additional elements missing – for starting discussions

3 RelatedItemReference
Conveying Catalog Information Catalog Metadata Catalog Info (at “document”) Catalog attributes like Validity, context… Catalog attributes… Catalog Entry Type Elements listed, contextual and additional info ItemReference Attributes like status(in this catalog e.g. deleted, active), additional classification… Item Attributes… RelatedItem Relations between items in the context of this catalog RelationType RelatedItemReference

4 Complete Information model

5 Creatinine 24H renal clearance panel (V2)
Example of an orderable panel in a lab service compendium Creatinine 24H renal clearance panel (V1) Body weight Body height Volume of 24H urine collection Actual duration of 24H urine collection Asked at order entry kg ; 1 decimal Asked at order entry cm ; 1 decimal Status: obsolete Asked at specimen collection mL ; integer Asked at specimen collection Hours # ; integer is replaced by requests as input observation Creatinine 24H renal clearance panel (V2) Blood specimen uses as specimen Serum or plasma Urine specimen has output observations 24H urine Volume of 24H urine collection Actual duration of 24H urine collection Spot urine creatinine level Creatinine measured in 24H urine Creatinine measured in serum or plasma Creatinine renal clearance in 24 hour mL Hours Mass/​volume Mass/​time Mass/​volume Mass/​time

6 Example of a simple orderable test in a lab service compendium: Direct Antiglobulin Test
CatalogEntry item LabService (ActivityDefinition?) serviceProvider: Quest Lab, CA orderable: yes status: active title: DAT orderable to Quest serviceCode: system: Quest, code: 361 serviceCode: system: CPT, code: 86880 serviceName: Direct Antiglobulin Test (DAT) servicePerformer: Quest Lab, CA diagnosticServiceSector: Immunohematology performanceSchedule: Tues-Sat, day shift, 5 a.m. turnAroundTime: 3 days relatedTo relationshipType: uses as specimen CatalogEntry item SpecimenDefinition SpecimenDefinition.specimenToLab serviceProvider: Quest Lab, CA orderable: no status: active title: 3-5 ml whole blood specimen typeCollected: system: SNOMED, code: , display: Blood specimen type: whole blood in ACD-A or ACD-B preference: preferred minimumVolume: 3 mL expectedVolume: 5mL containerMaterial: glass containerType: tube containerCap: yellow containerDescription: ACD-A or ACD-B (yellow-top) tube containerAdditive: citric acid, sodium citrate & dextrose rejectionCriterion (4): hemolysis; SST; received frozen; red top tube .handling relatedTo relationshipType: has output observation conditionSet: ambient maxDuration: 24 H CatalogEntry item ObservationDefinition .handling serviceProvider: Quest Lab, CA orderable: no status: active title: DAT observation category: immunohematology code: system LOINC, code code: system QUEST, code name: Direct antiglobulin test.poly specific reagent permittedDataType: coded multipleResultsAllowed: no method: system SNOMED, code , display Agglutination validCodedAnswers: positive ; negative conditionSet: refrigerated maxDuration: 72 H SpecimenDefinition.specimenToLab type: whole blood in EDTA (pink-top) preference: alternate minimumVolume: 3 mL expectedVolume: 5mL containerCap: pink containerDescription: EDTA (pink-top) tube containerAdditive: Ethylene-Diamine-Tetra-Acetic acid rejectionCriterion (4): identical to those for preferred

7 Example: Medicines Paracetamol Codeine Diazepam Medicinal Product
Packaged Medicinal Product Paracetamol Actadis 500 tab Paracetamol Actadis 500 tab bx 20 Pharmaceutical Product Packaged Medicinal Product Medicinal Product Paracetamol 500 mg Tablets Ben-U-Ron 500 Tabl Ben-U-Ron 500 tab, Box 20 Packaged Medicinal Product Substance Pharmaceutical Product Medicinal Product Ben-U-Ron 500 Cap Paracetamol Paracetamol 500 mg Capsules Ben-U-Ron 500 Cap Packaged Medicinal Product Pharmaceutical Product Dol-u-ron Forte® 500/30 Cap Box 20 Medicinal Product Paracetamol 500 mg + Codeine 30 Capsules Dol-u-ron Forte® 500/30 Cap Substance Packaged Medicinal Product Codeine Dol-u-ron Forte® 1000/60 Tab, Box 18 Pharmaceutical Product Medicinal Product Paracetamol 1000 mg + Codeine 60 Tablets Packaged Medicinal Product Dol-u-ron Forte® 1000/60 Tab Dol-u-ron Forte® 1000/60 Tab, Box 45 Substance Pharmaceutical Product Medicinal Product Packaged Medicinal Product Diazepam Diazepam 5 mg Tablets Valium® 5 Valium® 5, Box 30

8 How is this presented as resources
N different resource instances 2 Substances 4 Pharmaceutical Products (modeled as---?) 5 Medicinal Products 6 Packaged Medicinal Products One catalog to List & Link them all Containing one catalogEntry per each entry: Identify the resource Context-sensitive data, relationships

9 Other concepts (for later)
Local implementations may use local concepts. That is straightforward to derive: Concept can be a specialization of an existing concept – CTPP, a national “Non-Brand” code Example: Non-brand includes all products of a given formulation and dose form for a same package size, regardless of brand

10 Resources The List resource - enumerates a flat collection of resources and provides features for managing the collection. While a particular List instance may represent a "snapshot", from a business process perspective, the notion of "list" is dynamic – items are added and removed over time. The List resource references other resources. Lists may be curated and have specific business meaning. The Group resource - defines a group of specific people, animals, devices, etc. by enumerating them, or by describing qualities that group members have. The Group resource refers to other resources, possibly implicitly. Groups are intended to be acted upon or observed as a whole (e.g., performing therapy on a group, calculating risk for a group, etc.). This resource will commonly be used for public health (e.g., describing an at-risk population), clinical trials (e.g., defining a test subject pool) and similar purposes. The Bundle resource - is an infrastructure container for a group of resources. It does not have narrative and is used to group collections of resources for transmission, persistence or processing (e.g., messages, documents, transactions, query responses, etc.). The content of bundles is typically algorithmically determined for a particular exchange or persistence purpose. The Composition resource - defines a set of healthcare-related information that is assembled together into a single logical document that provides a single coherent statement of meaning, establishes its own context and that has clinical attestation with regard to who is making the statement. The Composition resource provides the basic structure of a FHIR document. The full content of the document is expressed using a bundle containing the Composition and its entries.

11 RelatedItemReference
Implementation - Composition Catalog Metadata Composition Catalog attributes like Validity, context… Catalog attributes… Catalog Entry Type ItemReference Attributes like status(in this catalog e.g. deleted, active), additional classification… Item Attributes… CatalogEntry resource RelatedItem RelationType RelatedItemReference

12 RelatedItemReference
Implementation - List Catalog Metadata List Catalog attributes like Validity, context… Catalog attributes… Catalog Entry Type ItemReference Attributes like status(in this catalog e.g. deleted, active), additional classification… Item Attributes… Catalog Entry resource RelatedItem RelationType List?? (didn’t List use to have a “relatedItem” construct)? RelatedItemReference

13 1. Composition contains entries…
{ "resourceType": "Composition", "id": " ", "status": "final", "type": {"text": "Catalog"}, "subject": " ", "date": " ", "author": " ", "title": "2017 Catalog #1", "section":[ {"entry": {"reference":"catEntry1", "display":"Catalog Entry 1"} }, {"entry": {"reference":"catEntry2", "display":"Catalog Entry 2"} }, {"entry": {"reference":"catEntry3", "display":"Catalog Entry 3"} }, {"entry": {"reference":"catEntry4", "display":"Catalog Entry 4"} }, ... ] }

14 1. …or List contains entries…
{ "resourceType": "List", "id": " ", "status": "final", "mode": "snapshot", "title": "2017 Catalog #1", {"entry": {"flag":{"coding":"C001","display":"active"}, "deleted":"false","item": {"reference":"catEntry1", "display":"Catalog Entry 1"} }}, {"reference":"catEntry2", "display":"Catalog Entry 1"} }}, {"reference":"catEntry3", "display":"Catalog Entry 1"} }}, {"reference":"catEntry4", "display":"Catalog Entry 1"} }} ... }

15 2. …CatalogEntries … Codeine
{ "resourceType": "catalogEntry", "id": "catEntry1", "type": {"coding":"C001","display":"medication"}, "referencedItem": {"reference":"sub002","display":"Codeine"}, "status": {"coding":"active","display":"Active"}, "relatedItem": { "relationType":{"coding":"isIng","display":"Is ingredient for"}, "item":{"reference":"med014","display":"Paracetamol 500 mg + Codeine 30 capsules"} }, "item":{"reference":"med015","display":"Paracetamol 1000 mg + Codeine tablets"} } Codeine Substance Paracetamol 500 mg + Codeine 30 Capsules Pharmaceutical Product Paracetamol 1000 mg + Codeine 60 Tablets

16 Resources contain the details that are not associated with a specific catalog context
{ "resourceType": "substance": "id": "subs001", "code":{"coding":"sub002","display":"Codeine"} ... } "resourceType": "Medication", "id": “med011", "code": { "coding": [{ "system": " "code": “PhP001", "display": "paracetamol 500 mg Tablets" ] }, "form": { "system": " "code": "xxxyyyyzzz", "display": "tablets"

17 Rendered using the structure above
Medication Catalog for prescribing: Pharmaceutical and Medicinal Products Rendered using the structure above “Generic”/Active Principle prescription list “Generic”/Active Principle prescription list Medicinal Product Paracetamol Actadis 500 tab bx 20 Packaged Medicinal Product Each “catalog” retains the relevant resources. E.g. “Prescription drug” catalog is curated by the hospital and contains only the authorized elements of type Pharmaceutical Products and Medicinal Products – for “generic prescription” and “brand prescription”. Similar to retaining RxNorm and NDC without needing the “root” substances Paracetamol Actadis 500 tab Medicinal Product Ben-U-Ron 500 tab, Box 20 Packaged Medicinal Product Ben-U-Ron 500 Tabl Medicinal Product Ben-U-Ron 500 Cap Packaged Medicinal Product Ben-U-Ron 500 Cap Medicinal Product Dol-u-ron Forte® 500/30 Cap Box 20 Packaged Medicinal Product Dol-u-ron Forte® 500/30 Cap Dol-u-ron Forte® 1000/60 Tab, Box 18 Packaged Medicinal Product Medicinal Product Dol-u-ron Forte® 1000/60 Tab, Box 45 Packaged Medicinal Product Dol-u-ron Forte® 1000/60 Tab Medicinal Product Valium® 5, Box 30 Packaged Medicinal Product Valium® 5

18 User rendering is not in scope
Once the information is obtained in a standard format, it can be used in any format that is convenient Medication for prescribing Pharmaceutical Product Name Code Form Paracetamol 500 mg Tablets PhP001 Tablet Paracetamol 500 mg Capsules PhP002 Capsule Paracetamol 1000 mg + Codeine 30 mg Capsules PhP003 Paracetamol 1000 mg + Codeine 60 mg Capsules PhP004 From Pharmaceutical Products Brand Code Available Paracetamol Actadis MP001 N Ben-U-Ron 500 Cpr MP002 Y Ben-U-Ron 500 Caps MP003 Dol-u-ron 500/30 Cap MP004 Dol-u-ron Forte® 1000/60 Tab MP005 From Medicinal Products

19 Example: Devices . . .. .

20 For devices

21 For Lab stuff


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