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Saccharomyces Genome Database (SGD)
Rama Balakrishnan AmiGO Tutorial Saccharomyces Genome Database (SGD) Stanford University
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What is AmiGO? Web application that reads from the GO Database
Allows to browse the ontologies annotations from various species compare sequences (Gost)
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AmiGO http://www.godatabase.org
Graphical View
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Some basics Is_a relationship Part_of relationship
Node has children, can be clicked to view children Node has been opened, can be clicked to close Leaf node or no children
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Browsing the Ontologies
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Click on the term name to view term details and annotations
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Term details links to representations of this term in other databases Annotations from various species
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Term Tree View
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Annotations associated with a term
Annotation data are from the gene_associations file submitted by the annotating groups
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Graphical View for the term: DNA replication
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Searching by gene product name
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Advanced search
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GOST-Gene Ontology blaST
Blast a protein sequence against all gene products that have a GO annotation.
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GOst
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