1. Cells Unit
A Tour of the Cell 2

2. Concept 6.5: Mitochondria and chloroplasts change energy from one form to another
Mitochondria are the sites of cellular respiration, a metabolic process that generates ATP
Chloroplasts, found in plants and algae, are the sites of photosynthesis
Peroxisomes are oxidative organelles
For the Cell Biology Video ER and Mitochondria in Leaf Cells, go to Animation and Video Files.
For the Cell Biology Video Mitochondria in 3D, go to Animation and Video Files.
For the Cell Biology Video Chloroplast Movement, go to Animation and Video Files.
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3. Mitochondria and chloroplasts Are not part of the endomembrane system
Have a double membrane
Have proteins made by free ribosomes
Contain their own DNA
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4. Mitochondria: Chemical Energy Conversion
Mitochondria are in nearly all eukaryotic cells
They have a smooth outer membrane and an inner membrane folded into cristae
The inner membrane creates two compartments: intermembrane space and mitochondrial matrix
Some metabolic steps of cellular respiration are catalyzed in the mitochondrial matrix
Cristae present a large surface area for enzymes that synthesize ATP
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5. in the mitochondrial matrix
Fig. 6-17
Intermembrane space
Outer membrane
Free ribosomes
in the mitochondrial matrix
Inner membrane
Cristae
Figure 6.17 The mitochondrion, site of cellular respiration
Matrix
0.1 µm

6. Chloroplasts: Capture of Light Energy
The chloroplast is a member of a family of organelles called plastids
Chloroplasts contain the green pigment chlorophyll, as well as enzymes and other molecules that function in photosynthesis
Chloroplasts are found in leaves and other green organs of plants and in algae
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7. Chloroplast structure includes:
Thylakoids, membranous sacs, stacked to form a granum
Stroma, the internal fluid
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8. Inner and outer membranes
Fig. 6-18
Ribosomes
Stroma
Inner and outer membranes
Granum
1 µm
Thylakoid
Figure 6.18 The chloroplast, site of photosynthesis

9. Peroxisomes: Oxidation
Peroxisomes are specialized metabolic compartments bounded by a single membrane
Peroxisomes produce hydrogen peroxide and convert it to water
Oxygen is used to break down different types of molecules
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10. Chloroplast Peroxisome Mitochondrion 1 µm Fig. 6-19
Figure 6.19 A peroxisome
1 µm

11. Concept 6.6: The cytoskeleton is a network of fibers that organizes structures and activities in the cell
The cytoskeleton is a network of fibers extending throughout the cytoplasm
It organizes the cell’s structures and activities, anchoring many organelles
It is composed of three types of molecular structures:
Microtubules
Microfilaments
Intermediate filaments
For the Cell Biology Video The Cytoskeleton in a Neuron Growth Cone, go to Animation and Video Files
For the Cell Biology Video Cytoskeletal Protein Dynamics, go to Animation and Video Files.
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12. Microtubule Microfilaments 0.25 µm Fig. 6-20
Figure 6.20 The cytoskeleton
Microfilaments
0.25 µm

13. Roles of the Cytoskeleton: Support, Motility, and Regulation
The cytoskeleton helps to support the cell and maintain its shape
It interacts with motor proteins to produce motility
Inside the cell, vesicles can travel along “monorails” provided by the cytoskeleton
Recent evidence suggests that the cytoskeleton may help regulate biochemical activities
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14. Receptor for motor protein
Fig. 6-21
Vesicle
ATP
Receptor for motor protein
Motor protein (ATP powered)
Microtubule
of cytoskeleton
(a)
Microtubule
Vesicles
0.25 µm
Figure 6.21 Motor proteins and the cytoskeleton
(b)

15. Components of the Cytoskeleton
Three main types of fibers make up the cytoskeleton:
Microtubules are the thickest of the three components of the cytoskeleton
Microfilaments, also called actin filaments, are the thinnest components
Intermediate filaments are fibers with diameters in a middle range
For the Cell Biology Video Actin Network in Crawling Cells, go to Animation and Video Files.
For the Cell Biology Video Actin Visualization in Dendrites, go to Animation and Video Files.
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16. Table 6-1 Table 6-1 10 µm 10 µm 10 µm Column of tubulin dimers
Keratin proteins
Actin subunit
Fibrous subunit (keratins coiled together)
25 nm
7 nm
8–12 nm  
Tubulin dimer

17. 10 µm Column of tubulin dimers Tubulin dimer   25 nm Table 6-1a

18. Table 6-1b
10 µm
Table 6-1b
Actin subunit
7 nm

19. Fibrous subunit (keratins coiled together)
Table 6-1c
5 µm
Table 6-1c
Keratin proteins
Fibrous subunit (keratins
coiled together)
8–12 nm

20. Microtubules
Microtubules are hollow rods about 25 nm in diameter and about 200 nm to 25 microns long
Functions of microtubules:
Shaping the cell
Guiding movement of organelles
Separating chromosomes during cell division
For the Cell Biology Video Transport Along Microtubules, go to Animation and Video Files.
For the Cell Biology Video Movement of Organelles in Vivo, go to Animation and Video Files.
For the Cell Biology Video Movement of Organelles in Vitro, go to Animation and Video Files.
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21. Centrosomes and Centrioles
In many cells, microtubules grow out from a centrosome near the nucleus
The centrosome is a “microtubule-organizing center”
In animal cells, the centrosome has a pair of centrioles, each with nine triplets of microtubules arranged in a ring
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22. Longitudinal section of one centriole Microtubules Cross section
Fig. 6-22
Centrosome
Microtubule
Centrioles
0.25 µm
Figure 6.22 Centrosome containing a pair of centrioles
Longitudinal section of one centriole
Microtubules
Cross section
of the other centriole

23. Video: Paramecium Cilia
Cilia and Flagella
Microtubules control the beating of cilia and flagella, locomotor appendages of some cells
Cilia and flagella differ in their beating patterns
Video: Chlamydomonas
Video: Paramecium Cilia
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24. Direction of organism’s movement
Fig. 6-23
Direction of swimming
(a) Motion of flagella
5 µm
Direction of organism’s movement
Figure 6.23a A comparison of the beating of flagella and cilia—motion of flagella
Power stroke
Recovery stroke
(b) Motion of cilia
15 µm

25. Animation: Cilia and Flagella
Cilia and flagella share a common ultrastructure:
A core of microtubules sheathed by the plasma membrane
A basal body that anchors the cilium or flagellum
A motor protein called dynein, which drives the bending movements of a cilium or flagellum
Animation: Cilia and Flagella
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26. Cross section of cilium
Fig. 6-24
Outer microtubule doublet
Plasma membrane
0.1 µm
Dynein proteins
Central microtubule
Radial spoke
Protein cross-linking outer doublets
Microtubules
(b)
Cross section of cilium
Plasma membrane
Basal body
0.5 µm
(a)
Longitudinal section of cilium
0.1 µm
Figure 6.24 Ultrastructure of a eukaryotic flagellum or motile cilium
Triplet
(c) Cross section of basal body

27. How dynein “walking” moves flagella and cilia:
Dynein arms alternately grab, move, and release the outer microtubules
Protein cross-links limit sliding
Forces exerted by dynein arms cause doublets to curve, bending the cilium or flagellum
For the Cell Biology Video Motion of Isolated Flagellum, go to Animation and Video Files.
For the Cell Biology Video Flagellum Movement in Swimming Sperm, go to Animation and Video Files.
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28. Figure 6.25 How dynein “walking” moves flagella and cilia
Microtubule
doublets
ATP
Dynein
protein
(a) Effect of unrestrained dynein movement
ATP
Cross-linking proteins
inside outer doublets
Anchorage
in cell
Figure 6.25 How dynein “walking” moves flagella and cilia
(b) Effect of cross-linking proteins 1 3 2
(c) Wavelike motion

29. (a) Effect of unrestrained dynein movement
Fig. 6-25a
Microtubule doublets
ATP
Figure 6.25a How dynein “walking” moves flagella and cilia
Dynein protein
(a) Effect of unrestrained dynein movement

30. Cross-linking proteins inside outer doublets
Fig. 6-25b
ATP
Cross-linking proteins inside outer doublets
Anchorage in cell
(b) Effect of cross-linking proteins 1 3
Figure 6.25b, c How dynein “walking” moves flagella and cilia 2
(c) Wavelike motion

31. Microfilaments (Actin Filaments)
Microfilaments are solid rods about 7 nm in diameter, built as a twisted double chain of actin subunits
The structural role of microfilaments is to bear tension, resisting pulling forces within the cell
They form a 3-D network called the cortex just inside the plasma membrane to help support the cell’s shape
Bundles of microfilaments make up the core of microvilli of intestinal cells
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32. Microfilaments (actin filaments)
Fig. 6-26
Microvillus
Plasma membrane
Microfilaments (actin filaments)
Figure 6.26 A structural role of microfilaments
Intermediate filaments
0.25 µm

33. Microfilaments that function in cellular motility contain the protein myosin in addition to actin
In muscle cells, thousands of actin filaments are arranged parallel to one another
Thicker filaments composed of myosin interdigitate with the thinner actin fibers
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34. Figure 6.27 Microfilaments and motility
Muscle cell
Actin filament
Myosin filament
Myosin arm
(a) Myosin motors in muscle cell contraction
Cortex (outer cytoplasm):
gel with actin network
Inner cytoplasm: sol
with actin subunits
Extending
pseudopodium
(b) Amoeboid movement
Nonmoving cortical
cytoplasm (gel)
Figure 6.27 Microfilaments and motility
Chloroplast
Streaming
cytoplasm
(sol)
Vacuole
Parallel actin
filaments
Cell wall
(c) Cytoplasmic streaming in plant cells

35. Muscle cell Actin filament Myosin filament Myosin arm
Fig, 6-27a
Muscle cell
Actin filament
Myosin filament
Myosin arm
Figure 6.27a Microfilaments and motility
(a) Myosin motors in muscle cell contraction

36. Cortex (outer cytoplasm): gel with actin network
Fig. 6-27bc
Cortex (outer cytoplasm): gel with actin network
Inner cytoplasm: sol with actin subunits
Extending pseudopodium
(b) Amoeboid movement
Nonmoving cortical cytoplasm (gel)
Chloroplast
Streaming cytoplasm (sol)
Figure 6.27b,c Microfilaments and motility
Vacuole
Parallel actin filaments
Cell wall
(c) Cytoplasmic streaming in plant cells

37. Localized contraction brought about by actin and myosin also drives amoeboid movement
Pseudopodia (cellular extensions) extend and contract through the reversible assembly and contraction of actin subunits into microfilaments
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38. Video: Cytoplasmic Streaming
Cytoplasmic streaming is a circular flow of cytoplasm within cells
This streaming speeds distribution of materials within the cell
In plant cells, actin-myosin interactions and sol-gel transformations drive cytoplasmic streaming
Video: Cytoplasmic Streaming
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39. Intermediate Filaments
Intermediate filaments range in diameter from 8–12 nanometers, larger than microfilaments but smaller than microtubules
They support cell shape and fix organelles in place
Intermediate filaments are more permanent cytoskeleton fixtures than the other two classes
For the Cell Biology Video Interphase Microtubule Dynamics, go to Animation and Video Files.
For the Cell Biology Video Microtubule Sliding in Flagellum Movement, go to Animation and Video Files.
For the Cell Biology Video Microtubule Dynamics, go to Animation and Video Files.
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40. Concept 6.7: Extracellular components and connections between cells help coordinate cellular activities
Most cells synthesize and secrete materials that are external to the plasma membrane
These extracellular structures include:
Cell walls of plants
The extracellular matrix (ECM) of animal cells
Intercellular junctions
For the Cell Biology Video Ciliary Motion, go to Animation and Video Files.
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41. Cell Walls of Plants
The cell wall is an extracellular structure that distinguishes plant cells from animal cells
Prokaryotes, fungi, and some protists also have cell walls
The cell wall protects the plant cell, maintains its shape, and prevents excessive uptake of water
Plant cell walls are made of cellulose fibers embedded in other polysaccharides and protein
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42. Plant cell walls may have multiple layers:
Primary cell wall: relatively thin and flexible
Middle lamella: thin layer between primary walls of adjacent cells
Secondary cell wall (in some cells): added between the plasma membrane and the primary cell wall
Plasmodesmata are channels between adjacent plant cells
For the Cell Biology Video E-cadherin Expression, go to Animation and Video Files.
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43. Secondary cell wall Primary cell wall Middle lamella Central vacuole
Fig. 6-28
Secondary cell wall
Primary cell wall
Middle lamella
1 µm
Central vacuole
Cytosol
Figure 6.28 Plant cell walls
Plasma membrane
Plant cell walls
Plasmodesmata

44. RESULTS 10 µm Distribution of cellulose synthase over time
Fig. 6-29
RESULTS
10 µm
Figure 6.29 What role do microtubules play in orienting deposition of cellulose in cell walls?
Distribution of cellulose synthase over time
Distribution of microtubules over time

45. The Extracellular Matrix (ECM) of Animal Cells
Animal cells lack cell walls but are covered by an elaborate extracellular matrix (ECM)
The ECM is made up of glycoproteins such as collagen, proteoglycans, and fibronectin
ECM proteins bind to receptor proteins in the plasma membrane called integrins
For the Cell Biology Video Cartoon Model of a Collagen Triple Helix, go to Animation and Video Files.
For the Cell Biology Video Staining of the Extracellular Matrix, go to Animation and Video Files.
For the Cell Biology Video Fibronectin Fibrils, go to Animation and Video Files.
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46. Figure 6.30 Extracellular matrix (ECM) of an animal cell, part 1
Collagen
Proteoglycan
complex
Polysaccharide
molecule
EXTRACELLULAR FLUID
Carbo-
hydrates
Fibronectin
Core
protein
Integrins
Proteoglycan
molecule
Plasma
membrane
Proteoglycan complex
Figure 6.30 Extracellular matrix (ECM) of an animal cell, part 1
Micro-
filaments
CYTOPLASM

47. Proteoglycan complex Collagen EXTRACELLULAR FLUID Fibronectin
Fig. 6-30a
Collagen
Proteoglycan complex
EXTRACELLULAR FLUID
Fibronectin
Integrins
Plasma membrane
Figure 6.30 Extracellular matrix (ECM) of an animal cell, part 1
Micro-filaments
CYTOPLASM

48. Polysaccharide molecule
Fig. 6-30b
Polysaccharide molecule
Carbo-hydrates
Core protein
Figure 6.30 Extracellular matrix (ECM) of an animal cell, part 2
Proteoglycan molecule
Proteoglycan complex

49. Functions of the ECM: Support Adhesion Movement Regulation
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50. Intercellular Junctions
Neighboring cells in tissues, organs, or organ systems often adhere, interact, and communicate through direct physical contact
Intercellular junctions facilitate this contact
There are several types of intercellular junctions
Plasmodesmata
Tight junctions
Desmosomes
Gap junctions
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51. Plasmodesmata in Plant Cells
Plasmodesmata are channels that perforate plant cell walls
Through plasmodesmata, water and small solutes (and sometimes proteins and RNA) can pass from cell to cell
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52. Cell walls Interior of cell Interior of cell 0.5 µm Plasmodesmata
Fig. 6-31
Cell walls
Interior of cell
Interior of cell
Figure 6.31 Plasmodesmata between plant cells
0.5 µm
Plasmodesmata
Plasma membranes

53. Tight Junctions, Desmosomes, and Gap Junctions in Animal Cells
At tight junctions, membranes of neighboring cells are pressed together, preventing leakage of extracellular fluid
Desmosomes (anchoring junctions) fasten cells together into strong sheets
Gap junctions (communicating junctions) provide cytoplasmic channels between adjacent cells
Animation: Tight Junctions
Animation: Desmosomes
Animation: Gap Junctions
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54. Figure 6.32 Intercellular junctions in animal tissues
Tight junction
Tight junctions prevent
fluid from moving
across a layer of cells
0.5 µm
Tight junction
Intermediate
filaments
Desmosome
Desmosome
Gap
junctions
1 µm
Figure 6.32 Intercellular junctions in animal tissues
Extracellular
matrix
Space
between
cells
Gap junction
Plasma membranes
of adjacent cells
0.1 µm

55. Tight junctions prevent fluid from moving across a layer of cells
Fig. 6-32a
Tight junctions prevent fluid from moving across a layer of cells
Tight junction
Intermediate filaments
Desmosome
Gap junctions
Figure 6.32 Intercellular junctions in animal tissues—tight junctions
Extracellular matrix
Space between cells
Plasma membranes of adjacent cells

56. Plasmodesmata in Plant Cells
Plasmodesmata are channels that perforate plant cell walls
Through plasmodesmata, water and small solutes (and sometimes proteins and RNA) can pass from cell to cell
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57. Cell walls Interior of cell Interior of cell 0.5 µm Plasmodesmata
Fig. 6-31
Cell walls
Interior of cell
Interior of cell
Figure 6.31 Plasmodesmata between plant cells
0.5 µm
Plasmodesmata
Plasma membranes

58. Tight Junctions, Desmosomes, and Gap Junctions in Animal Cells
At tight junctions, membranes of neighboring cells are pressed together, preventing leakage of extracellular fluid
Desmosomes (anchoring junctions) fasten cells together into strong sheets
Gap junctions (communicating junctions) provide cytoplasmic channels between adjacent cells
Animation: Tight Junctions
Animation: Desmosomes
Animation: Gap Junctions
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings

59. Figure 6.32 Intercellular junctions in animal tissues
Tight junction
Tight junctions prevent
fluid from moving
across a layer of cells
0.5 µm
Tight junction
Intermediate
filaments
Desmosome
Desmosome
Gap
junctions
1 µm
Figure 6.32 Intercellular junctions in animal tissues
Extracellular
matrix
Space
between
cells
Gap junction
Plasma membranes
of adjacent cells
0.1 µm

60. Tight junctions prevent fluid from moving across a layer of cells
Fig. 6-32a
Tight junctions prevent fluid from moving across a layer of cells
Tight junction
Intermediate filaments
Desmosome
Gap junctions
Figure 6.32 Intercellular junctions in animal tissues—tight junctions
Extracellular matrix
Space between cells
Plasma membranes of adjacent cells

61. Fig. 6-UN1 Cell Component Structure Function Concept 6.3 Nucleus
Surrounded by nuclear
envelope (double membrane)
perforated by nuclear pores.
The nuclear envelope is
continuous with the
endoplasmic reticulum (ER).
Houses chromosomes, made of
chromatin (DNA, the genetic
material, and proteins); contains
nucleoli, where ribosomal
subunits are made. Pores
regulate entry and exit of
materials.
The eukaryotic cell’s genetic
instructions are housed in
the nucleus and carried out
by the ribosomes
(ER)
Ribosome
Two subunits made of ribo-
somal RNA and proteins; can be
free in cytosol or bound to ER
Protein synthesis
Concept 6.4
Endoplasmic reticulum
Extensive network of
membrane-bound tubules and
sacs; membrane separates
lumen from cytosol;
continuous with
the nuclear envelope.
Smooth ER: synthesis of
lipids, metabolism of carbohy-
drates, Ca2+ storage, detoxifica-tion of drugs and poisons
The endomembrane system
regulates protein traffic and
performs metabolic functions
in the cell
(Nuclear
envelope)
Rough ER: Aids in synthesis of
secretory and other proteins from
bound ribosomes; adds
carbohydrates to glycoproteins;
produces new membrane
Golgi apparatus
Stacks of flattened
membranous
sacs; has polarity
(cis and trans
faces)
Modification of proteins, carbo-
hydrates on proteins, and phos-
pholipids; synthesis of many
polysaccharides; sorting of Golgi
products, which are then
released in vesicles.
Lysosome
Membranous sac of hydrolytic
enzymes (in animal cells)
Breakdown of ingested substances,
cell macromolecules, and damaged
organelles for recycling
Vacuole
Large membrane-bounded
vesicle in plants
Digestion, storage, waste
disposal, water balance, cell
growth, and protection
Concept 6.5
Mitochondrion
Bounded by double
membrane;
inner membrane has
infoldings (cristae)
Cellular respiration
Mitochondria and chloro-
plasts change energy from
one form to another
Chloroplast
Typically two membranes
around fluid stroma, which
contains membranous thylakoids
stacked into grana (in plants)
Photosynthesis
Peroxisome
Specialized metabolic
compartment bounded by a
single membrane
Contains enzymes that transfer
hydrogen to water, producing
hydrogen peroxide (H2O2) as a
by-product, which is converted
to water by other enzymes
in the peroxisome

62. Fig. 6-UN1a Cell Component Structure Function Concept 6.3 Nucleus
Surrounded by nuclear
envelope (double membrane)
perforated by nuclear pores.
The nuclear envelope is
continuous with the
endoplasmic reticulum (ER).
Houses chromosomes, made of
chromatin (DNA, the genetic
material, and proteins); contains
nucleoli, where ribosomal
subunits are made. Pores
regulate entry and exit os
materials.
The eukaryotic cell’s genetic
instructions are housed in
the nucleus and carried out
by the ribosomes
(ER)
Ribosome
Two subunits made of ribo-
somal RNA and proteins; can be
free in cytosol or bound to ER
Protein synthesis

63. Fig. 6-UN1b Cell Component Structure Function Concept 6.4
Endoplasmic reticulum
Extensive network of
membrane-bound tubules and
sacs; membrane separates
lumen from cytosol;
continuous with
the nuclear envelope.
Smooth ER: synthesis of
lipids, metabolism of carbohy-
drates, Ca2+ storage, detoxifica-
tion of drugs and poisons
The endomembrane system
regulates protein traffic and
performs metabolic functions
in the cell
(Nuclear
envelope)
Rough ER: Aids in sythesis of
secretory and other proteins
from bound ribosomes; adds
carbohydrates to glycoproteins;
produces new membrane
Golgi apparatus
Stacks of flattened
membranous
sacs; has polarity
(cis and trans
faces)
Modification of proteins, carbo-
hydrates on proteins, and phos-
pholipids; synthesis of many
polysaccharides; sorting of
Golgi products, which are then
released in vesicles.
Breakdown of ingested sub-
stances cell macromolecules, and damaged organelles for recycling
Lysosome
Membranous sac of hydrolytic
enzymes (in animal cells)
Vacuole
Large membrane-bounded
vesicle in plants
Digestion, storage, waste
disposal, water balance, cell
growth, and protection

64. Fig. 6-UN1c Cell Component Structure Function Concept 6.5
Mitochondrion
Bounded by double
membrane;
inner membrane has
infoldings (cristae)
Cellular respiration
Mitochondria and chloro-
plasts change energy from
one form to another
Chloroplast
Typically two membranes
around fluid stroma, which
contains membranous thylakoids
stacked into grana (in plants)
Photosynthesis
Peroxisome
Specialized metabolic
compartment bounded by a
single membrane
Contains enzymes that transfer
hydrogen to water, producing
hydrogen peroxide (H2O2) as a
by-product, which is converted
to water by other enzymes
in the peroxisome

65. Fig. 6-UN2

66. Fig. 6-UN3

67. You should now be able to:
Distinguish between the following pairs of terms: magnification and resolution; prokaryotic and eukaryotic cell; free and bound ribosomes; smooth and rough ER
Describe the structure and function of the components of the endomembrane system
Briefly explain the role of mitochondria, chloroplasts, and peroxisomes
Describe the functions of the cytoskeleton
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68. Describe the structure of a plant cell wall
Compare the structure and functions of microtubules, microfilaments, and intermediate filaments
Explain how the ultrastructure of cilia and flagella relate to their functions
Describe the structure of a plant cell wall
Describe the structure and roles of the extracellular matrix in animal cells
Describe four different intercellular junctions
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings