1. Enabling discoverability and dissemination through TDM
Mappet Walker
Frontiers Media SA
Enabling discoverability and dissemination through TDM
Use Cases
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2. Discussions TDM in Scholarly Communication Life Cycle
TDM enabled Health State Modelling
TDM enabled Archeology
Good morning.
The next 15min, I will share our progress creating use cases for TDM in Scholarly Communication.
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3. Discoverability: Text and Data Mining in
Scholarly Communication Life Cycle
Question or Idea
Research
Informal Communication
Conference Proceedings
Journal Articles
Abstracts & Indexes
Edited Volumes
Books
Reference Sources
Tertiary
Literature
Secondary
Primary
Cycle of
Scholarly Communication
Simulate
Experiment
Observe
Manage the data
Analyze the data
Share the data
Research Cycle
Integration with data repositories (common repository API)
Guidelines for reviewing data before article publication
Data citation to reuse data and validate published results
New versions of a dataset include new research
Guidelines for authors to include data citations in reference list
Submit
Review
Publish
Reuse &
Extend
Prepare
New submission
Cycle of
Journal Publication
Everybody in this room knows that that Scholarly production is cyclical in nature.
It could be TDM enabled in the step where the RESEARCH step. [Click]
Specifically, it could be TDM enabled when the Researcher is needs other research data to simulate, experiment, augment and observe.
Text and Data Mining innovations could make these cycles work more effectively. Text and Data Mining tools could provide stakeholders with tools that work in two directions.
Provide a selection of items (data / articles / etc.) that directly touch upon their interests and expertise
Allow them to leverage large data sets of articles to draw general conclusions (meta-studies, epidemiological studies, etc.)
As the article is published, [click], publishers have the responsibility to disseminate these articles with data repositories like OpenAIRE and CORE.
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4. A short pause and plugging, Join the OpenMinTED call for content.
For the content providers, OpenMinTED provides three options for connecting content. One, you can register through OpenAIRE or CORE. Two, you can use the tools to create your own corpora. And three, implement your own content and connector APIs. If you are interested in the details, please come and see me after the talk.
We are looking for content providers (publishers, repositories, libraries and other holders of scholarly publications) who would like to make their content discoverable and mineable through the OpenMinTeD platform. Joining the call will not only increase your content’s visibility and impact, but you can also win a sum of money to help you with the implementation. You can submit a proposal until 05 November 2017.
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5. TDM enabled Health State Modelling
“the right intervention for the right patient, at the right time”
.. HSM is defining the time aspect..
M. Rebhan, Mar 2017
Now, let us to a Research Use Case in Life Sciences.
Precision Medicine is about the Right Intervention for the Right Patient at the Right Time. Health State Modelling is defining the time aspect of PM using probabilistic Markov’s models to interventions.
How does TDM enable PM-HSM research?
Reference:
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6. TDM assisted flow on HSM research for Chronic Liver Disease
Annotate
Annotated
Articles 4
HSM CLD
Article 2 3
List of CLD
article name, two
state transition,
state specific terms, interventions 5
Chronic Liver Disease
Text & Data Mining 6 1
Review and approve
We drew an 8 step flow to extract Chronic Liver Disease articles from the OMTD repository focusing on progression.
The result… 7
Repeat
Step 1 – 8 Using
Reviewed features
and Connectors
Dictionary of
features and
Connectors
OMTD
Data Repository 8

7. TDM assisted flow on HSM research for Chronic Liver Disease, preliminary results - progression
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8. Health States Progression Symptom Cause Association Regression
Resolution
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9. Next steps For progression: Model the next health states:
Subject matter expert review and confirmation
Continue to mine next batch of articles
Integrate into OMTD platform and APIs
Model the next health states:
Symptom
Causes
Association
Regression
Resolution
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10. TDM assisted research on Archeology, Rock Art
In archaeology, rock art is human-made markings placed on natural stone; it is largely synonymous with parietal art. A global phenomenon, rock art is found in many culturally diverse regions of the world.
Source:
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11. TDM assisted flow on Rock Art Research
Annotate
Annotated
Articles
Rock Art
Article 5 3 4
List of Rock Art
name of site,
Longitude, latitude,
Modern country,
Link to article 6
Rock ART
Text & Data Mining 7 2
Review and approve 1 8
Search: "rock painting", "rock art", "cave painting", "cave art" + relevant synonyms
Dictionary of
features and
Connectors
OMTD
Data Repository

12. TDM assisted research Rock Art, preliminary results
* 1176 found, 50 processed
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13. Next steps Subject matter expert review and confirmation
Continue to mine next batch of articles
Integrate into OMTD platform and APIs
Share as an open source code
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14. Thank you! Merci! Danke!
ευχαριστώ
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