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Organic Chemistry All living things are mostly composed of 4 elements: H, O, N, C “honk” Compounds are broken down into 2 general categories: Inorganic Compounds: Do not contain carbon Organic compounds Contain significant amounts of carbon. Often found with common "functional groups"
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Carbon: The “Swiss Army Knife” of Chemistry.
Carbon is essential to life for several reasons: It can form strong stable (usually non-polar) covalent bonds It can form up to 4 chemical bonds It can form multiple bonds
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Organic Compounds Organic Compounds often form Polymers
Long chains of smaller molecules (not atoms) called monomers, bind to form huge Macromolecules 4 Types: Carbohydrates, Lipids, Proteins & Nucleic acids
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Carbohydrates Includes: Sugars, starches, cellulose & glycogen
Made of Carbon ( C ), Hydrogen ( H ), and Oxygen (O ) Following ratio of elements CnH2nOn Sugars: Provide immediate energy for cells Simple sugars include Glucose & Fructose since these are made of only 1 Carbohydrate molecule they are known as Monosaccharides Glucose: A Monosaccharide
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Dehydration Synthesis
Monosaccharides can be linked together through the process of Dehydration Synthesis Water is removed from 2 monocaccharides - resulting in a covalent bond between the 2 molecules Sucrose (table sugar) is made of 2 sugars linked together and these are called Disaccharides Require some digestion to be used by cells
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Hydrolysis Dehydration synthesis is a reversible process Called Hydrolysis. A water molecule is inserted where the monomers join. Breaking their bonds.
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Dehydration Synthesis Simplified
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Hydrolysis Simplified
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Polysaccharides Starches are many monosaccharides linked together in a single chain. These are called Polysaccharides. Plants use Starch for energy storage e.g. Potatoes Two types of starches Amylose - Long strait unbranched chains Pectins - many linked short Amylose chains Starch
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Cellulose Cellulose is made of long polysaccharide chains
Plants use this for structure (e.g. Wood) - not very digestible Due to the reverse orientation of the monosaccharide subunits, digestive enzymes cannot hydrolyze the bonds between them Cellulose
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Glycogen Glycogen is a moderately branched polysaccharide
Animals use this for short-term energy storage. Mostly stored in the human liver until converted to fat Glycogen
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Lipids Lipids are macromolecules including Fats, Waxes and Oils.
Primary function is energy storage. Energy is stored in C-H bonds. More efficient in storing energy Lipids are made of 2 parts Glycerol - an alcohol - Serves as backbone of the molecule 3 Fatty acids - Long hydrocarbon chains
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Dehydration Synthesis of a Lipid
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Hydrolysis of a Lipid
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Types of fats Saturated fats have long chains with no double-bonds
Unsaturated fats have double bonds Polyunsaturated fats have many double bonds Each time a double bond is encountered, the molecule "Bends" slightly, resulting in a lower density of the lipid. This makes the molecule more likely to remain liquid at room or body temperatures. And thus, less likely to clog cardiac arteries.
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Other Lipids 4 Other types of biologically important Lipids
Phospholipids - Important for membrane structure Steroids - eg. Cholesterol & testosterone. Provide membrane support / serve as hormones Terpenes - serve as important components of pigments Prostaglandins - appear to act like localized hormones to induce cellular/tissue responses
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Proteins Proteins are made of Amino Acids
There are 20 different amino acids. Each having a similar general structure - Differ only in their “R” groups
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Peptide Bonds Amino acids form proteins via dehydration synthesis forming peptide bonds Two amino acids linked together are called dipeptides More than 2 linked together are called polypeptides - polypeptides can be thousands of amino acids long
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Dehydration synthesis of a protein
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Hydrolysis of a Protein
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Protein Structure Protein types include globular proteins which are usually enzymes and Fiberous proteins which usually serve for structure (eg. Hair) Proteins Exhibit 4 “levels of structure.
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Primary Structure Primary Structure of a protein is it’s sequence of amino acids Primary Structure dictates all further levels of protein structure
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Secondary Structure The Sequence (primary structure) causes parts of a protein molecule to fold into sheets or bend into helix shapes - this is a protein’s Secondary Structure.
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Tertiary Structure The protein then can compact and twist on itself to form a mass called it’s Tertiary Structure
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Quaternary Structure Several Proteins then can can combine and form a protein’s Quaternary Structure Various conformations are usually caused by the formation of hydrogen or disulfide bonds. PH, changes or heat can disrupt these bonds, permanently denaturing the protein.
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Nucleic Acids Two types of Nucleic acids DNA (Deoxyribonucleic Acid)
RNA (Ribonucleic acid) DNA is Formed of in a "Double Helix" - like a spiral staircase.
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Nucleotides DNA is formed from Nucleotides
These are made of 3 components A 5-Carbon Sugar A Nitrogenous base A Phosphate group Nucleotides form a backbone through linkages from the OH group of the 3rd carbon to a phosphate group of the adjoining nucleotide. These are called Phosphodiester bonds
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Types of Nucleotides For DNA There are 4 different Nucleotides categorized as either Purines (double ring) or Pyramidines (single ringed). These are usually represented by a letter. These Are: Adenine (A) Cytosine (C) Guanine (G) Thymine (T)
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Base Pairing Rules Each "Rung" of the DNA "staircase" is formed by the linking of 2 Nucleotides through Hydrogen Bonds. These Hydrogen bonds form only between specific Nucleotides. This is known as Base Pairing. The rules are as follows: Adenine (A) will ONLY bond to Thymine (T) Cytosine (C) will ONLY bond to Guanine (G)
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Summary of DNA Structure
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RNA AKA ribonucleic acid
RNA differs from DNA in several important ways. It is much smaller It is single-stranded It does NOT contain Thymine, but rather a new nucleotide called Uracil which will bind to Adenine.
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Short for Adenosine Tri-Phosphate
Short for Adenosine Tri-Phosphate. ATP is closely related to nucleic acids. Composed of Ribose, Adenine & a phosphate group Phosphate group has ability to bind/release additional phosphate group allowing it to store or release energy ATP
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