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Kevin Read, MLIS, MAS NYU Langone Health

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Presentation on theme: "Kevin Read, MLIS, MAS NYU Langone Health"— Presentation transcript:

1 Kevin Read, MLIS, MAS NYU Langone Health Twitter: @readkev
A cross-institutional data discovery collaboration: Highlighting invisible research data Supplementing EHR data for research S24 Kevin Read, MLIS, MAS NYU Langone Health

2 Disclosure I have no relevant relationships with commercial interests to disclose. AMIA | amia.org

3 Learning Objectives After participating in this session you should be better able to: Describe an initiative designed to make research data more discoverable Identify the benefits of a multisite data discovery initiative: Highlighting institutional research data Identifying high-value datasets that require additional resources Informing national data discovery efforts AMIA | amia.org

4 The Data Discovery Problem
88% of datasets from NIH-funded publications were ‘invisible’ (>200,000 datasets) AMIA | amia.org

5 The Data Discovery Solution (partly)
datamed.org AMIA | amia.org

6 The Persistent Discovery Problem
? >200,000 unidentified datasets/yr datamed.org AMIA | amia.org

7 NYU Data Catalog: A Solution
datacatalog.med.nyu.edu AMIA | amia.org

8 NYU Data Catalog: A Solution
datacatalog.med.nyu.edu DOES NOT STORE DATA AMIA | amia.org

9 NYU Data Catalog: Dataset Types
External Datasets NYU Datasets AMIA | amia.org

10 NYU Data Catalog: External Datasets
AMIA | amia.org

11 NYU Data Catalog: Internal Datasets
NYU Datasets AMIA | amia.org

12 NYU Data Catalog: Types of Data
Population health data Quality improvement data Submissions to clinical registries EHR data pulls for research Epidemiology data Clinical trials data Geospatial data AMIA | amia.org

13 NYU Data Catalog: Types of Data
Population health data Quality improvement data Submissions to clinical registries EHR data pulls for research Epidemiology data Clinical trials data Geospatial data AMIA | amia.org

14 Non-NYU Patient Encounter External Data Transfers
EHR: EPIC Analysis Datasets NYU Patient Encounter Clinical Data Request Publications Clinical Data Governance Abstracted Data Reports Analysis Datasets EDC Publications Reports External Site Non-NYU Patient Encounter External Data Transfers External Site AMIA | amia.org

15 NYU Data Catalog: EHR Datasets
AMIA | amia.org

16 NYU Data Catalog: EHR Datasets
AMIA | amia.org

17 NYU Data Catalog: Flexible Discovery
Administrative Research Software Quality Improvement AMIA | amia.org

18 NYU Data Catalog: Open Source
AMIA | amia.org

19 NYU Data Catalog: Interoperability
AMIA | amia.org

20 NYU Data Catalog: DATS Interoperability
DATS Metadata Specifications NYU Data Catalog Metadata AMIA | amia.org

21 NYU Data Catalog: Discovery Solution?
AMIA | amia.org

22 NYU Data Catalog: Discovery Solution?
AMIA | amia.org

23 NYU Data Catalog: Collaboration
Open Source Interoperability AMIA | amia.org

24 Data Catalog Collaboration
Multisite Collaboration: Data Catalog Collaboration

25 Data Catalog Collaboration
Multisite Collaboration: Efforts Research, EHR, QI data Data Catalog Collaboration

26 Data Catalog Collaboration
Multisite Collaboration: Efforts Genomics data Data Catalog Collaboration

27 Data Catalog Collaboration
Multisite Collaboration: Efforts Data Catalog Collaboration Research data

28 Data Catalog Collaboration
Multisite Collaboration: Efforts Data Catalog Collaboration Research data

29 Data Catalog Collaboration
Multisite Collaboration: Efforts Data Catalog Collaboration CTSI - Clinical Research Institute

30 Data Catalog Collaboration
Multisite Collaboration: Efforts Data Catalog Collaboration Research data

31 Data Catalog Collaboration
Multisite Collaboration: Outcomes Data Catalog Collaboration Previously undiscoverable: Research data EHR data Genomics Data QI data

32 NYU Data Catalog Growth
>12k users >55k page views >400 researchers AMIA | amia.org

33 Data Catalog Model: Benefits
Provides low-barrier entree into data sharing Offers researchers with a level of control over their data Flexibility of the types of research data objects described Ideal for identifying high-value datasets Valuable for gauging data sharing challenges AMIA | amia.org

34 Future Directions Develop a Data Catalog Coordinating Center
Recruit additional institutions looking to improve data discovery Develop QI/Research Arm: Data discovery use cases Data types High value datasets Data sharing workflows Partner with national data discovery initiatives AMIA | amia.org

35 References NYU Data Catalog: Read K, Contaxis N, L I, Larson C, LaPolla FWZ, Surkis A. NYU Data Catalog Lamb I, Larson C. Shining a light on scientific data: Building a data catalog to foster data sharing and reuse. Code4Lib. 2016;32. Available from: AMIA | amia.org

36 Email me at: kevin.read@med.nyu.edu
Thank you! me at:


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