1. Warm-Up
Contrast adaptive radiation vs. convergent evolution? Give an example of each.
What is the correct sequence from the most comprehensive to least comprehensive taxon?
In a population of 500 rabbits, 320 are homozygous dominant for brown coat color (BB), 160 are heterozygous (Bb), and 20 are homozygous white (bb).
What are the frequencies of the alleles (B and b)?
What are the frequencies of the different genotypes (BB, Bb, and bb)?

2. Phylogeny and the Tree of Life
Chapter 26
Phylogeny and the Tree of Life

3. What you need to know:
The taxonomic categories and how they indicate relatedness.
How systematics is used to develop phylogenetic trees.
The three domains of life including their similarities and their differences.

4. (evolutionary history)
Systematics: classifying organisms and determining their evolutionary relationships
Taxonomy
(classification)
Systematics
Phylogenetics
(evolutionary history)

5. Tools used to determine evolutionary relationships: Fossils
Morphology (homologous structures)
Molecular evidence (DNA, amino acids)
Who is more closely related?
Animals and fungi are more closely related than either is to plants.

6. Taxonomy: science of classifying and naming organisms
Binomial nomenclature (Genus species)
Naming system developed by Carolus Linnaeus.

7. REMEMBER!!
Dear King Philip Came Over For Good Spaghetti
Dear King Philip Crossed Over Five Great Seas
Dear King Philip Came Over From Germany Stoned
Your own???

8. Phylogenetic Tree
Branching diagram that shows evolutionary history of a group of organisms

10. Constructing a Cookie Phylogenetic Tree
Video: Bozeman or SimpleBiology

11. What is the difference between:
Phylogenetic tree and a Cladogram?

12. Cladogram: diagram that depicts patterns of shared characteristics among taxa
Clade = group of species that includes an ancestral species + all descendents. (*Lines do not = time)
Shared derived characteristics are used to construct cladograms
Turtle
Leopard
Hair
Amniotic egg
Four walking legs
Hinged jaws
Vertebral column
Salamander
Tuna
Lamprey
Lancelet (outgroup)
Cladogram

13. Monophyletic, paraphyletic, and polyphyletic groups

14. Constructing a phylogenetic tree
A 0 indicates a character is absent; a 1 indicates that a character is present.

15. Branch lengths can represent genetic change (phylogenetic trees)

16. Branch lengths can indicate time (Phylo.Trees)

17. Draw a phylogenetic tree based on the data below
Draw a phylogenetic tree based on the data below. Draw hatch marks on the tree to indicate the origin(s) of each of the 6 characters.

18. Answer:

19. What is:
Parsimony? Watch this: JQcrs

20. Principle of maximum parsimony: use simplest explanation (fewest DNA changes) for tree – “keep it simple”
Molecular clocks: some regions of DNA appear to evolve at constant rates
Estimate date of past evolutionary events
Eg. Origin of HIV infection in humans= 1930’s

21. Construct a cladogram:

22. Create a cladogram:

23. Answer: Closely related-1 and 2. Also, 3 and 4
Answer: Closely related-1 and 2. Also, 3 and 4. However, they’re not closely related to each other

24. More practice needed? https://www.youtube.com/watch?v=09eD4A_H xVQ
*the site given on your hard copy is down 

25. Various tree layouts
Circular (rooted) tree
Unrooted tree
Rooted tree

26. Tree of Life
3 Domains: Bacteria, Archaea, Eukarya

27. Identification of species
SYSTEMATICS
focuses on
phylogeny
Biological diversity
taxonomy
cladistics
classification
Identification of species D K P C O F G S
Homologous
similarities
fossils
binomial
molecular
Genus, species
morphology