2. The First Law of Thermodynamics
According to the first law of thermodynamics, the energy of the universe is constant:
– Energy can be transferred and transformed, but it cannot be created or destroyed
The first law is also called the principle of conservation of energy
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings

3. The Second Law of Thermodynamics
During every energy transfer or transformation, some energy is unusable, and is often lost as heat
According to the second law of thermodynamics:
– Every energy transfer or transformation increases the entropy (disorder) of the universe
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings

4. Progress of the reaction
Fig. 8-6
Reactants
Amount of
energy
released
(∆G < 0)
Energy
Free energy
Products
Progress of the reaction
(a) Exergonic reaction: energy released
Products
Figure 8.6 Free energy changes (ΔG) in exergonic and endergonic reactions
Amount of
energy
required
(∆G > 0)
Energy
Free energy
Reactants
Progress of the reaction
(b) Endergonic reaction: energy required

5. Adenine Phosphate groups Ribose Fig. 8-8
Figure 8.8 The structure of adenosine triphosphate (ATP)
Ribose

6. H2O P P P Adenosine triphosphate (ATP) P + P P + Energy
Fig. 8-9 P P P
Adenosine triphosphate (ATP)
H2O
Figure 8.9 The hydrolysis of ATP P + P P +
Energy i
Inorganic phosphate
Adenosine diphosphate (ADP)

7. Fig. 8-10 + ∆G = +3.4 kcal/mol Glutamic acid Ammonia Glutamine
NH2
NH3 +
∆G = +3.4 kcal/mol
Glu
Glu
Glutamic
acid
Ammonia
Glutamine
(a) Endergonic reaction 1
ATP phosphorylates
glutamic acid,
making the amino
acid less stable. P +
ATP +
ADP
Glu
Glu
NH2 P 2
Ammonia displaces
the phosphate group,
forming glutamine.
NH3 + + P i
Glu
Glu
Figure 8.10 How ATP drives chemical work: Energy coupling using ATP hydrolysis
(b) Coupled with ATP hydrolysis, an exergonic reaction
(c) Overall free-energy change

8. + H2O Energy for cellular work (endergonic, energy-consuming
Fig. 8-12
ATP +
H2O
Energy from
catabolism (exergonic,
energy-releasing
processes)
Energy for cellular
work (endergonic,
energy-consuming
processes)
Figure 8.12 The ATP cycle
ADP + P i

9. Electrons carried via NADH Electrons carried via NADH and FADH2
Fig
Electrons
carried
via NADH
Electrons carried
via NADH and
FADH2
Oxidative
phosphorylation:
electron transport
and
chemiosmosis
Glycolysis
Citric
acid
cycle
Glucose
Pyruvate
Mitochondrion
Cytosol
Figure 9.6 An overview of cellular respiration
ATP
ATP
ATP
Substrate-level
phosphorylation
Substrate-level
phosphorylation
Oxidative
phosphorylation

10. Oxidative phosphorylation accounts for almost 90% of the ATP generated by cellular respiration
A smaller amount of ATP is formed in glycolysis and the citric acid cycle by substrate-level phosphorylation
Copyright © 2008 Pearson Education, Inc., publishing as Pearson Benjamin Cummings

11. Enzyme Enzyme ADP P Substrate + ATP Product Fig. 9-7
Figure 9.7 Substrate-level phosphorylation
Product

12. Energy investment phase
Fig. 9-8
Energy investment phase
Glucose
2 ADP + 2 P
2 ATP
used
Energy payoff phase
4 ADP + 4 P
4 ATP
formed
2 NAD e– + 4 H+
2 NADH
+ 2 H+
Figure 9.8 The energy input and output of glycolysis
2 Pyruvate + 2 H2O
Net
Glucose
2 Pyruvate + 2 H2O
4 ATP formed – 2 ATP used
2 ATP
2 NAD e– + 4 H+
2 NADH + 2 H+

13. CYTOSOL MITOCHONDRION NAD+ NADH + H+ 2 1 3 Acetyl CoA Pyruvate
Fig. 9-10
CYTOSOL
MITOCHONDRION
NAD+
NADH
+ H+ 2 1 3
Acetyl CoA
Figure 9.10 Conversion of pyruvate to acetyl CoA, the junction between glycolysis and the citric acid cycle
Pyruvate
Coenzyme A
CO2
Transport protein

14. Pyruvate CO2 NAD+ CoA NADH + H+ Acetyl CoA CoA CoA Citric acid cycle 2
Fig. 9-11
Pyruvate
CO2
NAD+
CoA
NADH
+ H+
Acetyl CoA
CoA
CoA
Citric
acid
cycle 2
CO2
Figure 9.11 An overview of the citric acid cycle
FADH2
3 NAD+
FAD 3
NADH
+ 3 H+
ADP + P i
ATP

15. Figure 9.13 Free-energy change during electron transport
NADH 50 2 e–
NAD+
FADH2 2 e–
FAD
Multiprotein
complexes  40
FMN
FAD
Fe•S 
Fe•S Q

Cyt b
Fe•S 30
Cyt c1 IV
Free energy (G) relative to O2 (kcal/mol)
Cyt c
Cyt a
Cyt a3 20
Figure 9.13 Free-energy change during electron transport e– 10 2
(from NADH
or FADH2)
2 H+ + 1/2 O2
H2O

16. i INTERMEMBRANE SPACE H+ Stator Rotor Internal rod Cata- lytic knob
Fig. 9-14
INTERMEMBRANE SPACE H+
Stator
Rotor
Internal
rod
Figure 9.14 ATP synthase, a molecular mill
Cata-
lytic
knob
ADP + P
ATP i
MITOCHONDRIAL MATRIX

17. Electron transport chain 2 Chemiosmosis
Fig. 9-16 H+ H+ H+ H+
Protein complex
of electron
carriers
Cyt c V Q
 
ATP synthase 
2 H+ + 1/2O2
H2O
FADH2
FAD
NADH
NAD+
Figure 9.16 Chemiosmosis couples the electron transport chain to ATP synthesis
ADP + P
ATP i
(carrying electrons
from food) H+ 1
Electron transport chain 2
Chemiosmosis
Oxidative phosphorylation

18. Fig. 9-17
CYTOSOL
Electron shuttles
span membrane
MITOCHONDRION
2 NADH or
2 FADH2
2 NADH
2 NADH
6 NADH
2 FADH2
Glycolysis
Oxidative
phosphorylation:
electron transport
and
chemiosmosis 2
Pyruvate 2
Acetyl
CoA
Citric
acid
cycle
Glucose
+ 2 ATP
+ 2 ATP
+ about 32 or 34 ATP
Figure 9.17 ATP yield per molecule of glucose at each stage of cellular respiration
About
36 or 38 ATP
Maximum per glucose:

19. (a) Alcohol fermentation
Fig. 9-18a
2 ADP + 2 P
2 ATP i
Glucose
Glycolysis
2 Pyruvate
2 NAD+
2 NADH 2
CO2
+ 2 H+
Figure 9.18a Fermentation
2 Acetaldehyde
2 Ethanol
(a) Alcohol fermentation

20. (b) Lactic acid fermentation
Fig. 9-18b
2 ADP + 2 P
2 ATP i
Glucose
Glycolysis
2 NAD+
2 NADH
+ 2 H+
2 Pyruvate
Figure 9.18b Fermentation
2 Lactate
(b) Lactic acid fermentation

21. Ethanol or lactate Citric acid cycle
Fig. 9-19
Glucose
Glycolysis
CYTOSOL
Pyruvate
O2 present:
Aerobic cellular
respiration
No O2 present:
Fermentation
MITOCHONDRION
Ethanol or
lactate
Acetyl CoA
Figure 9.19 Pyruvate as a key juncture in catabolism
Citric
acid
cycle

22. Citric acid cycle Oxidative phosphorylation
Fig. 9-20
Proteins
Carbohydrates
Fats
Amino
acids
Sugars
Glycerol
Fatty
acids
Glycolysis
Glucose
Glyceraldehyde-3- P
NH3
Pyruvate
Acetyl CoA
Figure 9.20 The catabolism of various molecules from food
Citric
acid
cycle
Oxidative
phosphorylation

23. Fig. 10-3
Leaf cross section
Vein
Mesophyll
Stomata
CO2 O2
Chloroplast
Mesophyll cell
Outer
membrane
Figure 10.3 Zooming in on the location of photosynthesis in a plant
Thylakoid
Intermembrane
space
5 µm
Stroma
Granum
Thylakoid
space
Inner
membrane
1 µm

24. Reactants: 6 CO2 12 H2O Products: C6H12O6 6 H2O 6 O2 Fig. 10-4
Figure 10.4 Tracking atoms through photosynthesis

25. i CO2 Light NADP+ ADP Calvin Cycle Light Reactions ATP NADPH
Fig
H2O
CO2
Light
NADP+
ADP + P i
Calvin
Cycle
Light
Reactions
ATP
Figure 10.5 An overview of photosynthesis: cooperation of the light reactions and the Calvin cycle
NADPH
Chloroplast
[CH2O]
(sugar) O2

26. Light Reflected light Chloroplast Absorbed Granum light Transmitted
Fig. 10-7
Light
Reflected
light
Chloroplast
Figure 10.7 Why leaves are green: interaction of light with chloroplasts
Absorbed
light
Granum
Transmitted
light

27. RESULTS Fig. 10-9 Chloro- Chlorophyll b Absorption of light by
phyll a
Chlorophyll b
Absorption of light by
chloroplast pigments
Carotenoids
(a) Absorption spectra
400
500
600
700
Wavelength of light (nm)
(measured by O2 release)
Rate of photosynthesis
Figure 10.9 Which wavelengths of light are most effective in driving photosynthesis?
(b) Action spectrum
Aerobic bacteria
Filament
of alga
(c) Engelmann’s
experiment
400
500
600
700

28. Electron transport chain
Fig
Electron
transport
chain
Primary
acceptor
Primary
acceptor 4 7
Electron transport chain Fd Pq e– 2 e– 8 e–
H2O e–
NADP+
+ H+
Cytochrome
complex
2 H+
NADP+
reductase + 3
1/2 O2
NADPH Pc e– e–
P700 5
P680
Light 1
Light 6 6
ATP
Figure How linear electron flow during the light reactions generates ATP and NADPH
Pigment
molecules
Photosystem I
(PS I)
Photosystem II
(PS II)

29. Primary acceptor Primary Fd acceptor Fd NADP+ Pq + H+ NADP+ reductase
Fig
Primary
acceptor
Primary
acceptor Fd Fd
NADP+
+ H+ Pq
NADP+
reductase
Cytochrome
complex
NADPH Pc
Figure Cyclic electron flow
Photosystem I
Photosystem II
ATP

30. H+ Diffusion Electron transport chain ADP + P
Fig
Mitochondrion
Chloroplast
MITOCHONDRION
STRUCTURE
CHLOROPLAST
STRUCTURE H+
Diffusion
Intermembrane
space
Thylakoid
space
Electron
transport
chain
Inner
membrane
Thylakoid
membrane
Figure Comparison of chemiosmosis in mitochondria and chloroplasts
ATP
synthase
Matrix
Stroma
Key
ADP + P i
ATP
Higher [H+] H+
Lower [H+]

31. Fig. 10-17 STROMA (low H+ concentration) Cytochrome complex
Photosystem II
Photosystem I
4 H+
Light
NADP+
reductase
Light Fd 3
NADP+ + H+ Pq
NADPH e– Pc e– 2
H2O 1
1/2 O2
THYLAKOID SPACE
(high H+ concentration)
+2 H+
4 H+ To
Calvin
Cycle
Figure The light reactions and chemiosmosis: the organization of the thylakoid membrane
Thylakoid
membrane
ATP
synthase
STROMA
(low H+ concentration)
ADP +
ATP P i H+

32. Fig. 10-18-3 Figure 10.18 The Calvin cycle Input 3 (Entering one
at a time)
CO2
Phase 1: Carbon fixation
Rubisco 3 P P
Short-lived
intermediate 3 P P 6 P
Ribulose bisphosphate
(RuBP)
3-Phosphoglycerate 6
ATP
6 ADP
3 ADP
Calvin
Cycle 6 3 P P
ATP
1,3-Bisphosphoglycerate 6
NADPH
Phase 3:
Regeneration of
the CO2 acceptor
(RuBP)
6 NADP+ 6 P i
Figure The Calvin cycle 5 P
G3P 6 P
Glyceraldehyde-3-phosphate
(G3P)
Phase 2:
Reduction 1 P
Glucose and
other organic
compounds
Output
G3P
(a sugar)

33. C4 leaf anatomy The C4 pathway Mesophyll cell Mesophyll cell CO2
Fig
C4 leaf anatomy
The C4 pathway
Mesophyll
cell
Mesophyll cell
CO2
Photosynthetic
cells of C4
plant leaf
PEP carboxylase
Bundle-
sheath
cell
Oxaloacetate (4C)
PEP (3C)
Vein
(vascular tissue)
ADP
Malate (4C)
ATP
Pyruvate (3C)
Bundle-
sheath
cell
Stoma
CO2
Calvin
Cycle
Figure C4 leaf anatomy and the C4 pathway
Sugar
Vascular
tissue

34. (a) Spatial separation of steps (b) Temporal separation of steps
Fig
Sugarcane
Pineapple C4
CAM
CO2
CO2
Mesophyll
cell 1
CO2 incorporated
into four-carbon
organic acids
(carbon fixation)
Night
Organic acid
Organic acid
Figure C4 and CAM photosynthesis compared
Bundle-
sheath
cell
CO2
CO2
Day 2
Organic acids
release CO2 to
Calvin cycle
Calvin
Cycle
Calvin
Cycle
Sugar
Sugar
(a) Spatial separation of steps
(b) Temporal separation of steps