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GO Annotation from different sources

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Presentation on theme: "GO Annotation from different sources"— Presentation transcript:

1 GO Annotation from different sources

2 Secondary Sources of GO annotation
EXAMPLES: public databases (eg. NCBI, UniProtKB) genome browsers (eg. Ensembl) array vendors (eg. Affymetrix) CONSIDERATIONS: What is the original source? When was it last updated? Are evidence codes displayed?

3 C. Obtaining GO annotations from Secondary Sources
AIM: Look at how different public resources and tools display GO.

4 GO annotation obtained for chick GAPDH (P00356) from different sources:
QuickGO (primary source) UniProtKB database NCBI Entrez Gene page Ensembl browser Affymetrix chick array g:profiler gene expression analysis tool

5 QuickGO

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13 Comparison of Chicken GAPDH GO annotation
obtained from different sources. GO evidence codes not reported.


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