1. INFORMATION FLOW
AARTHI & NEHA

2. DATA COLLATION
1) Assembly, Prediction, Annotation and Comparative provide us with data which are compiled into a searchable database. 2)Along with that we will also compile this data in special formats used by other tools like BLAST and the SYNTENY VIEWER.

3. BASIC BROWSER DESIGN
While using our website, the user may follow certain paths in their workflow, starting with the home page.
From Home access is provided to a genome viewer (to a selected contig in a selected genome)
Search forms for querying the database
From search results, access to Feature Details
A BLAST search
From BLAST results, access to Feature Details
An MLST typing tool
Comparative genomics data ( Synteny, Phylogeny, Genome characteristics profiles)

4. From the viewer : In the viewer, you see a positional overview of selected feature types.
Feature Details: a page where all data in the database on a feature is shown
From Details, link back to the viewer
From Details, links to external databases (KEGG, Pubmed)
From Details, link to a BLAST search (homology search)

5. FUNCTIONAL ANNOTATION
Information Flow
GENE PREDICTION
FUNCTIONAL ANNOTATION
ASSEMBLY
COMPARITIVE GENOMICS
NEMO
DOWNLOAD
SEARCH
FEATURE DETAILS
VIEWER
BLAST
MLST

6. TASK DECOMPOSITION: SEARCH
Contig
Others
Gene
Protein GO

7. CONTIG
GENE
Name
Type
Strain
Length
PROTEIN
Name
Uniprot ID
OTHERS GO
KEGG
Interpro ID
Pubmed ID
Name
Type
E.C

8. TASK DECOMPOSITION:VIEWER
CONTIG VIEWER
HGT
CG VIEWER
SYNTENY
BLAST VISUALIZATION
PHYLOGENY

9. DOWNLOAD
Neisseria GENOMES
This is the overview of the strategy we plan to follow for presenting Neisseria genome database (NEMO ) that will provide graphical interface of M13519 & M16917 Neisseria strains and a comprehensive search tool .

10. THANK YOU