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BIDI: Biological Data Integration Database Design Options
Yassine LASSOUED 21 July 2007 BIDI Meeting
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Outline Previous Work and Meetings Existent Data
Database Design Options Future Work 21 July 2007 BIDI Meeting
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Previous Work Numerous options have been proposed
Two options have been pre-selected Data models have been implemented as Visio diagrams, using Arc Marine 21 July 2007 BIDI Meeting
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Existent Data Acoustic Surveys Nephrops Underwater TV Surveys
Larval Surveys Deep Water Surveys Groundfish Surveys HABs 21 July 2007 BIDI Meeting
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Acoustic Surveys 21 July 2007 BIDI Meeting
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Nephrops Underwater TV Surveys
21 July 2007 BIDI Meeting
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Larval Surveys 21 July 2007 BIDI Meeting
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Deep Water Surveys 21 July 2007 BIDI Meeting
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Groundfish Surveys 21 July 2007 BIDI Meeting
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HABs 21 July 2007 BIDI Meeting
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Integrated Biological Data Schema
Current Version (Based on Acoustic Surveys) FSS_Surveys FSS_SurveyTypes FSS_NASC FSS_Stratum_Bounds FSS_Vessels FSS_Scientists FSS_Events FSS_Hauls FSS_Samples FSS_AgedFish FSS_LengthFreq Original tables Information about surveys Information about events Information about samples 21 July 2007 BIDI Meeting
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Integrated Biological Data Schema
Extended Version Survey SurveyType Vessel Scientist Event Haul FishSample AgedFish LengthFrequency Original tables Business Tables Information about events Fish samples HABSample Cruise Track SurveyStation Country ICESDivision Species Gear HABStation Phytoplankton BioassayChemistry Isobath HABs Samples SurveyGears Catch 21 July 2007 BIDI Meeting
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Integrated Biological Data Schema
Aligning Business tables with the MIDM Contact Haul FishSample AgedFish LengthFrequency HABs_Sample SurveyStation ICESDivision Species Gear HABs_Station Phytoplankton BioassayChemistry Isobath Original tables Business Tables Information about events Fish samples HABs Samples Organisation ActivityContactRoles ActivityType Activity ActivityOrganisationRoles OrganisationRole ActivityMetadata Platform Country PlatformType ContactRole ActivityDevices Track Cruise Event ActivityGears Catch 21 July 2007 BIDI Meeting
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Design Options Fish Survey Stations 21 July 2007 BIDI Meeting Option B
Arc Marine SurveyStation InstantaneousPoint Option B ICESDivision Criteria Option B Ease of Understanding ▲▲▲ Ease of Query Formulation Normalization ▲▲▲ BCNF Storage Efficiency Access Efficiency Scalability Genericity ▲▲ Data Processing Harmony with the MIDM ▲ Compatibility with Arc Marine 21 July 2007 BIDI Meeting
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Design Options HABs Stations 21 July 2007 BIDI Meeting Option E
Arc Marine FeaturePoint Option E HABs_Station Criteria Option E Ease of Understanding ▲▲▲ Ease of Query Formulation Normalization ▲▲▲ BCNF Storage Efficiency Access Efficiency Scalability Genericity ▲▲ Data Processing Harmony with the MIDM Compatibility with Arc Marine 21 July 2007 BIDI Meeting
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IndividualMeasuredData
Design Options Fish Samples Option 1: Generic Sample Analyses Option D.1 ActivityDevices Activity Gear Haul Species Sample Catch SurveyStation SubSample Individual IndividualMeasuredData Parameter 21 July 2007 BIDI Meeting
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Design Options Fish Samples Option 2: Current model 21 July 2007
Option D.1 ActivityDevices Activity Gear Haul Species Sample Catch SurveyStation LengthFrequency Individual LengthClass 21 July 2007 BIDI Meeting
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Design Options Fish Samples Comparison 21 July 2007 BIDI Meeting
Criteria Option D.1 Option D.2 Ease of Understanding ▲▲ ▲▲▲ Ease of Query Formulation Normalization Storage Efficiency Access Efficiency Scalability Genericity ▲ Data Processing Harmony with the MIDM Compatibility with Arc M. 21 July 2007 BIDI Meeting
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Design Options HABs Samples Option 1: 21 July 2007 BIDI Meeting
Option F.1 HABSample Species HABStation Phytoplankton Bioassay WaterSample ShellfishSample Chemistry Organisation HABAnalysis 21 July 2007 BIDI Meeting
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Design Options HABs Samples Option 2: 21 July 2007 BIDI Meeting
Option F.2 HABSample Species HABStation Phytoplankton BioassayChemistry Organisation HABAnalysis 21 July 2007 BIDI Meeting
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Design Options Species 21 July 2007 BIDI Meeting Option G Species
Genus Family Order Class PhylumOrDivision Phylum Division Kingdom 21 July 2007 BIDI Meeting
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Future Work Improve and validate models Load data Benchmarking
Needed input from OSU Load data OSU (w/ Michael Blongewicz of DHI?) Benchmarking Publications CMRC & OSU: identify journals + write articles 21 July 2007 BIDI Meeting
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END 21 July 2007 BIDI Meeting
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