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with the Ensembl Genome Browser

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Presentation on theme: "with the Ensembl Genome Browser"— Presentation transcript:

1 with the Ensembl Genome Browser
Genome Browsing with the Ensembl Genome Browser

2 Genome Browsers UCSC NCBI Ensembl http://genome.ucsc.edu/

3 Ensembl Genome Browser

4 Human Genome

5 MapView

6 ContigView - Overview

7 CytoView

8 ContigView - Detailed view

9 GeneView

10 GeneSpliceView

11 GeneSNPView

12 GeneView → TransView/ProtView

13 TransView

14 TransView (continued)

15 ProtView

16 ProtView - Sequence

17 ProtView → DomainView/FamilyView

18 DomainView

19 FamilyView

20 ContigView → FeatureView

21 FeatureView

22 MapView → SyntenyView

23 SyntenyView

24 ContigView → MultiContigView

25 MultiContigView - Overview

26 MultiContigView – Detailed view

27 Other Ensembl Features
Blast searching Data mining (Biomart) Select data based on advanced criteria (e.g. genome location, protein domains, functional annotation, expression, orthology, etc.) Retrieve in various formats (HTML, Excel, text) Data downloading (FTP)


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