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Robustness and genetic networks
Eörs Szathmáry Collegium Budapest Eötvös University
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Selected members of five gene classes
Only one segment polarity gene is shown Most of the proteins are transcriptional activators
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Some regulatory interactions that esablishing gap gene expression
Krüppel is expressed in the grey region Bicoid is an activator Hunchback and giant are repressors Inelegant mechanism!
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Cooperativity in biomolecule activity
The degree of cooperativity can be measured by the Hill coefficient: the slope at inflection point Common in transcriptional regulation and ligand-receptor interactions
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Expression of segment-polarity genes in the embryo
Pair rule gene expression patterns regulate engrailed and wingless expression 14 parasegments are thus formed at en/wg boundaries True segment boundaries are displaced one cell to the right of the parasegment boundaries
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A model for the maintenance of segment polarity gene expression
Gene expression patterns (black in a) Part of the segment polarity network (lowercase: genes, uppercase: gene products) Each cell has one such network
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Space of functional segment polarity networks
22 parameters out of 48 are shown Gray polygons yield functional networks Kxy: concentration of X at which activity of y is half maximal, etc.. Mean and standard variation for polygons are shown
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Some insights Extremely robust to variation in individual parameters
Also against change in netwok topology Robust against change in concentration also
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A theoretical treatment
Let us borrow a model from neural networks Only two states: on and off Activators and inhibitors influence the weight Switch-like cooperativity 60% of random changes gives the same expression pattern One can select for networks with even higher robustness
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Dorsal view of the Drosophila wing
Heat-shock treatment induces the disappearance of cross-veins One can select for or against this sensitivity Genetic assimilation: some show the phenotype without the inducer! Does not work with inbred lines
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Incidence of Hsp90-induced eye deformities
Hsp90 associates with signal-transduction molecules Lines can be selected for tolerance of mutation of Hsp90
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Many ways of building the same body: the sea urchin
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Larvae can be very different
Feeding pluteus (a) A non-feeding larva (b) Direct development (c)
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Evolution of developmental modes
Black bars: direct development Most adult forms are conserved Ecological correlates: direct development no dispersal, large eggs
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