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Robustness and genetic networks

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Presentation on theme: "Robustness and genetic networks"— Presentation transcript:

1 Robustness and genetic networks
Eörs Szathmáry Collegium Budapest Eötvös University

2 Selected members of five gene classes
Only one segment polarity gene is shown Most of the proteins are transcriptional activators

3 Some regulatory interactions that esablishing gap gene expression
Krüppel is expressed in the grey region Bicoid is an activator Hunchback and giant are repressors Inelegant mechanism!

4 Cooperativity in biomolecule activity
The degree of cooperativity can be measured by the Hill coefficient: the slope at inflection point Common in transcriptional regulation and ligand-receptor interactions

5 Expression of segment-polarity genes in the embryo
Pair rule gene expression patterns regulate engrailed and wingless expression 14 parasegments are thus formed at en/wg boundaries True segment boundaries are displaced one cell to the right of the parasegment boundaries

6 A model for the maintenance of segment polarity gene expression
Gene expression patterns (black in a) Part of the segment polarity network (lowercase: genes, uppercase: gene products) Each cell has one such network

7 Space of functional segment polarity networks
22 parameters out of 48 are shown Gray polygons yield functional networks Kxy: concentration of X at which activity of y is half maximal, etc.. Mean and standard variation for polygons are shown

8 Some insights Extremely robust to variation in individual parameters
Also against change in netwok topology Robust against change in concentration also

9 A theoretical treatment
Let us borrow a model from neural networks Only two states: on and off Activators and inhibitors influence the weight Switch-like cooperativity 60% of random changes gives the same expression pattern One can select for networks with even higher robustness

10 Dorsal view of the Drosophila wing
Heat-shock treatment induces the disappearance of cross-veins One can select for or against this sensitivity Genetic assimilation: some show the phenotype without the inducer! Does not work with inbred lines

11 Incidence of Hsp90-induced eye deformities
Hsp90 associates with signal-transduction molecules Lines can be selected for tolerance of mutation of Hsp90

12 Many ways of building the same body: the sea urchin

13 Larvae can be very different
Feeding pluteus (a) A non-feeding larva (b) Direct development (c)

14 Evolution of developmental modes
Black bars: direct development Most adult forms are conserved Ecological correlates: direct development  no dispersal, large eggs


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