1. Factor Va Increases the Affinity of Factor Xa for Prothrombin
Subramanian Yegneswaran, José A Fernández, John H Griffin, Philip E Dawson 
Chemistry & Biology 
Volume 9, Issue 4, Pages (April 2002)
DOI: /S (02)

2. Figure 1 A Schematic Representation of the Prothrombinase Complex
A schematic representation of the prothrombinase complex is shown. Factor Xa (fXa), the serine protease, is shown in yellow. Its cofactor, factor Va (fVa), is depicted in red, and the substrate, prothrombin (fII), is depicted in blue. Also shown are two cleavage products of prothrombin, an intermediate meizothrombin (mIIa) and the product α-thrombin. The membrane surface is shown in green.
Chemistry & Biology 2002 9, DOI: ( /S (02) )

3. Figure 2 Chemical Structure and a Schematic Representation of LWB
The structure of LWB is shown as a chemical structure and a schematic, respectively.
(A) The fluorophore, fluorescein (shown in orange).
(B) The photocrosslinker, benzophenone, is shown in blue.
(C) The thiol reactive moiety, a bromoacetyl group, is shown in green.
Chemistry & Biology 2002 9, DOI: ( /S (02) )

4. Figure 3 Active Site-Directed Labeling of Factor Xa with LWB
A schematic representation of the active site-directed labeling of fXa with LWB (magenta). Enz (in green) represents factor Xa or any other serine protease. Phe-Phe-Arg represents the phenylalanine, phenylalanine, and arginine residues in the tripeptide chloromethylketone.
Chemistry & Biology 2002 9, DOI: ( /S (02) )

5. Figure 4 SDS-PAGE Analysis of Active Site-Specific Labeling Procedure
(A) AMA-FFR-fXai (11 μM) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 1 mM EDTA was incubated with LWB in the presence of 0.1 M NH2OH for 1 hr at 25°C. The reaction mixture was then purified according to procedures detailed in the Experimental Procedures. Purified product (20 μl) was analyzed using nonreduced SDS-PAGE on a 4%–12% gradient gel. The fluorescence of LWB-FFR-fXai was visualized using an UV illuminator prestaining with Coomassie blue (lanes 2 and 3). Lane 1 contains samples from a mock labeling reaction of AMA-FFR-fXai with LWB in the absence of NH2OH.
(B) Figure 4A stained using Coomassie blue G250.
Chemistry & Biology 2002 9, DOI: ( /S (02) )

6. Figure 5 PC/PS Dependence of LWB-FFR-fXai Fluorescence
LWB-FFR-fXai (initially 200 nM in cuvette) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2 was titrated with PC/PS vesicles, and the steady-state anisotropy of the fluorescein moiety in LWB-FFR-fXai was monitored at 490 nm excitation and 520 nm emission (closed circles). At the end of the titration, 5 mM EDTA (final) was added to the cuvette (open circle).
Chemistry & Biology 2002 9, DOI: ( /S (02) )

7. Figure 6 Factor Va Dependence of LWB-FFR-fXai Fluorescence
LWB-FFR-fXai (initially 200 nM in cuvette) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2 was titrated with PC/PS vesicles. The anisotropy value increased from a value of (for free LWB-FFR-fXai) to a value of upon the addition of 80 μM PC/PS. At this point, factor Va was titrated into the cuvette (closed circles). In a parallel titration, the LWB-FFR-fXai•PC/PS complex was titrated with protein C (open circles).
Chemistry & Biology 2002 9, DOI: ( /S (02) )

8. Figure 7 Prothrombin Dependence of LWB-FFR-fXai Fluorescence
(A) LWB-FFR-fXai (initially 200 nM in cuvette) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2 was titrated with PC/PS vesicles. The anisotropy value increased from a value of (for free LWB-FFR-fXai) to a value of upon the addition of 80 μM PC/PS. At this point, prothrombin was titrated into the cuvette (closed circles).
(B) LWB-FFR-fXai (initially 200 nM in cuvette) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2 was titrated with 80 μM PC/PS vesicles. Then, the LWB-FFR-fXai•PC/PS complex was titrated with fVa as described above. Finally, the LWB-FFR-fXai•PC/PS•fVa complex was titrated with prothrombin (closed circles).
Chemistry & Biology 2002 9, DOI: ( /S (02) )

9. Figure 8 LWB as a Photoactivable Probe
(A) LWB-FFR-fXai (50 nM) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2 was incubated with 2 μM prothrombin and 100 μM PC/PS vesicles for 5 min at room temperature. The sample was then irradiated with 254 nm UV light as described in the Experimental Procedures. The reaction mix was analyzed on a 4%–12% SDS-PAGE electrophoresis gel. The protein bands were then transferred to a membrane and were analyzed by Western blots. The primary rabbit polyclonal antibody was directed against human fXa. The secondary biotin-coupled antibody used here was anti-rabbit IgG. The bands were finally visualized by using streptavidin-coupled alkaline phosphatase as described in the Experimental Procedures. Lanes 1, 2, 3, and 4 contain the reaction mixture, the reaction performed in the absence of prothrombin, the reaction performed in the absence of LWB-FFR-fXai, and prestained molecular weight standards, respectively.
(B) LWB-FFR-fXai (1 μM) in 50 mM HEPES (pH 7.4), 150 mM NaCl, 2 mM CaCl2 was incubated with 2 μM protein C and 100 μM PC/PS vesicles (reaction mix) for 5 min at room temperature. The sample was then irradiated with 254 nm UV light as described in the Experimental Procedures. The sample was then diluted 1000-fold in the reaction buffer, and the reaction mix was analyzed on a 4%–12% SDS-PAGE electrophoresis gel. The protein bands were then transferred to a membrane and were analyzed by Western blots. The primary monoclonal antibody was directed against human protein C (C-3). The secondary biotin-coupled antibody used here was anti-mouse IgG. The bands were finally visualized by using streptavidin-coupled alkaline phosphatase as described in the Experimental Procedures. Lanes 1, 2, 3, and 4 contain the prestained molecular weights, the reaction mix without protein C, the reaction mix, and the reaction performed in the absence of LWB-FFR-fXai, respectively.
Chemistry & Biology 2002 9, DOI: ( /S (02) )