1. Modern Evolutionary Biology I. Population Genetics
A. Overview
B. The Genetic Structure of a Population
C. The Hardy-Weinberg Equilibrium Model
3. Utility:
- if a population is NOT in HWE, then one of the assumptions must be violated.
Sources of Variation Agents of Change
Mutation N.S.
Recombination Drift
- crossing over Migration
- independent assortment Mutation
Non-random Mating
VARIATION
So, if NO AGENTS are acting on a population, then it will be in equilibrium and WON'T change.

2. Modern Evolutionary Biology I. Population Genetics
A. Overview
B. The Genetic Structure of a Population
C. The Hardy-Weinberg Equilibrium Model
D. Deviations from HWE
1. mutation
1. Consider a population with:
f(A) = p = 0.6 f(a) = q = 0.4
2. Suppose 'a' mutates to 'A' at a realistic rate of:
μ = 1 x 10-5
3. Well, what fraction of alleles will change?
'a' will decline by: qm = .4 x =
'A' will increase by the same amount.
f(A) = p1 = f(a1) = q =

3. Modern Evolutionary Biology I. Population Genetics
A. Overview
B. The Genetic Structure of a Population
C. The Hardy-Weinberg Equilibrium Model
D. Deviations from HWE
1. mutation
2. migration
p2 = 0.7
q2 = 0.3
p1 = 0.2
q1 = 0.8
suppose migrants immigrate at a rate such that the new immigrants represent 10% of the new population

4. Modern Evolutionary Biology I. Population Genetics
A. Overview
B. The Genetic Structure of a Population
C. The Hardy-Weinberg Equilibrium Model
D. Deviations from HWE
1. mutation
2. migration
p2 = 0.7
q2 = 0.3
p1 = 0.2
q1 = 0.8
M = 10%
p(new) = p1(1-m) + p2(m)
= 0.2(0.9) + 0.7(0.1)
= = 0.25

5. a. Positive Assortative Mating – “Like mates with Like”
D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
a. Positive Assortative Mating – “Like mates with Like” AA Aa aa
0.2
0.6
offspring F1

6. a. Positive Assortative Mating – “Like mates with Like”
D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
a. Positive Assortative Mating – “Like mates with Like” AA Aa aa
0.2
0.6
offspring
ALL AA
1/4AA:1/2Aa:1/4aa
ALL aa F1

7. a. Positive Assortative Mating – “Like mates with Like”
D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
a. Positive Assortative Mating – “Like mates with Like” AA Aa aa
0.2
0.6
offspring
ALL AA
1/4AA:1/2Aa:1/4aa
ALL aa F1
0.35
0.3

8. D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
a. Positive Assortative Mating – “Like mates with Like”
b. Inbreeding: Mating with Relatives
Decreases heterozygosity across the genome, at a rate dependent on the degree of relatedness among mates.

9. D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
4. Finite Population Sizes: Genetic Drift
The organisms that actually reproduce in a population may not be representative of the genetics structure of the population; they may vary just due to sampling error

10. D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
4. Finite Population Sizes: Genetic Drift
1 - small pops will differ more, just by chance, from the original population

11. 2 - small pops will vary more from one another than large
D. Deviations from HWE
1. mutation
2. migration
3. Non-random Mating
4. Finite Population Sizes: Genetic Drift
1 - small pops will differ more, just by chance, from the original population
2 - small pops will vary more from one another than large

12. - “Founder Effect” D. Deviations from HWE 1. mutation 2. migration
3. Non-random Mating
4. Finite Population Sizes: Genetic Drift
- “Founder Effect”
The Amish, a very small, close-knit group decended from an initial population of founders, has a high incidence of genetic abnormalities such as polydactyly

13. - “Founder Effect” and Huntington’s Chorea
HC is a neurodegenerative disorder caused by an autosomal lethal dominant allele.
The fishing villages around Lake Maracaibo in Venezuela have the highest incidence of Huntington’s Chorea in the world, approaching 50% in some communities.
The gene was mapped to chromosome 4, and the HC allele was caused by a repeated sequence of over 35 “CAG’s”. Dr. Nancy Wexler found homozygotes in Maracaibo and described it as the first truly dominant human disease (most are incompletely dominant and cause death in the homozygous condition).

14. - “Founder Effect” and Huntington’s Chorea
HC is a neurodegenerative disorder caused by an autosomal lethal dominant allele.
The fishing villages around Lake Maracaibo in Venezuela have the highest incidence of Huntington’s Chorea in the world, approaching 50% in some communities.
By comparing pedigrees, she traced the incidence to a single woman who lived 200 years ago. When the population was small, she had 10 children who survived and reproduced. Folks with HC now trace their ancestry to this lineage.

15. - “Genetic Bottleneck”
If a population crashes (perhaps as the result of a plague) there will be both selection and drift. There will be selection for those resistant to the disease (and correlated selection for genes close to the genes conferring resistance), but there will also be drift at other loci simply by reducing the size of the breeding population.
Cheetah have very low genetic diversity, suggesting a severe bottleneck in the past. They can even exchange skin grafts without rejection…
European Bison, hunted to 12 individuals, now number over 1000.
Elephant seals fell to 100’s in the 1800s, now in the 100,000’s