1. Onto-Express
Genomics, 79: 266–270, 2002 & Genomics, 81: 98–104, 2003

2. Login

3. Login
Register

4. Registration

5. After log in

6. Select Onto-Express

7. Onto-Express window

8. Dataset1_chicken affy foldchange.txt
Settings

9. Species represented in Onto-Express

10. Analysis Progress

11. Tree view
Expand the DAG
Synchronized
Results

12. Synchronized view

13. Mouse over each category
to get this information
Pie chart synchronized with tree view

14. Flat view, Molecular Function
Display options
available
Flat view, Molecular Function

15. Display options available
Flat Pie Chart
Biological Process

16. Flat pie chart
Chromosomal location

17. Save Results

18. Save results

20. Result files
Available online in the folder Onto-Express_results

21. p value
GO ID
bioprocess.txt

22. Save results as GIF

25. GIF result Onto-Express help file and FAQ are available as
Ontoexpress_help.doc
Ontoexpress_faq.doc

26. For uploading your own annotations use OE2GO

27. Required files Annotation file Ontology file Input file
Reference array

28. Annotation file
Available in the folder entitled OE2GO_annotation&ontologyfiles

29. Ontology file www. geneontology.org
Available in the folder entitled OE2GO_annotation&ontologyfiles

30. OE2GO set up