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Monterey Bay Aquarium, 886 Cannery Row, Monterey, CA 93940, USA
Methodology for estimating length-at-maturity with application to elasmobranchs Henry F. Mollet Monterey Bay Aquarium, 886 Cannery Row, Monterey, CA 93940, USA
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Introduction N(Z)ormal Cumulative Function (ZCF)
Correlation of parameters, Probits, Logits Elasmobranch examples concentrating on shortfin mako with perspective
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N(Z)ormal Distribution Function
ZDF ((TL - )/) = mean TL-at-maturity (MTL) = Stand. deviation (measure of homogeneity) CV = / Parameters and not correlated
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N(Z)ormal Cumulative Function
ZCF ((TL - )/) Parameters = MTL and = stand. dev. (not correlated) Alternate parameter slope = 1/(2)0.5 CV = 25% in example
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Logistic (X) vs. ZCF &ZDF (O)
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Correlation Normal Cumulative
Alternate parameters Mat = ZCF (a + b TL) a = -MTL/ b = 1/ ( b = slope/2) a&b are correlated Logistic Alternate parameters Mat = 1/(1 + exp(a+bTL)) a = -MTL.4. slope b = slope/4 Example corr. (a&b) = corr. (MTL& slope = 0.082)
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Correlation in VBGF L & k are strongly correlated
Differential equation dM/dt = M2/3 - M = anabolic parameter (build-up) = catabolic parameter (break-down) k = /3 (Symbol for kappa?) M = ( /)3; L = q ( /) = q ( /3k)
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Probit & Logit Fig. 5 from Finney 1964 “Probit Analysis”
y = fraction mature for x cm TL ranges (Cannot use raw data) Probit = ZIF (y) + 5 Next step is to use weighted data & working probits Logit procedure is similar Logit = log (y/(1-y)) + 5
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Review of Literature Leslie et al Median Body-Weight at Maturity of Female Rats using Max. Likelihood/Probits Welch & Foucher Length-at-maturity of Pacific cod using Max. Likelihood/2-Parameter-Special-Sigmoid. Mollet et al Length at maturity of Shortfin mako using Max. Likelihood/Logistic (Common Sigmoid). Best is Normal Cumulative Function (ZCF) in combination with Max. Likelihood loss function (least squares is ok) . That’s what Francis & Ó Maolagáin 2000 used for NZ rig (M. lenticulatus), however, they called it Probit.
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Perspective of Shortfin Mako Maturity Data
Mollet et al months gestation, 3-year repro-cycle. Based on available data indicating that life-history parameters of different mako populations are similar. However, we were able to substantiate differences for size-at-maturity and mass. Should not affect gestation and repro-cycle.
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Mollet, Cliff, Pratt, & Stevens 2000 (Fig
Mollet, Cliff, Pratt, & Stevens 2000 (Fig. 4) WNA (n = 61), SH (n = = 82)
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Earlier version showing binomial data used in calculations
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Contour plots of loss function (=residual) for size-at-maturity for shortfin mako
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Quick & Dirty, Using Smallest Mature & Largest Immature
WNA: MTL ~ ( )/2 = 2.98 m; ~ ( ) = (correct 0.44 m) SH: MTL ~ ( )/2 = 2.72 m; ~ ( ) = (correct 0.21 m)
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Contour plots of loss function (=residual) for separate populations from South Africa and Australia
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Probit Linear Regression using WNA (eff. n = 24) and SH (eff
Probit Linear Regression using WNA (eff. n = 24) and SH (eff. n = 24) maturity data Cannot use raw data; y = fraction mature for 10 cm TL bins Probit = ZIF (y) + 5 Next step is to use weighted data & working probits Logit procedure is similar Logit = log (y/(1-y) + 5
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Size-at-maturity of selected female sharks
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