1. Metabolic Reprogramming of Stem Cell Epigenetics
James G. Ryall, Tim Cliff, Stephen Dalton, Vittorio Sartorelli 
Cell Stem Cell 
Volume 17, Issue 6, Pages (December 2015)
DOI: /j.stem
Copyright © 2015 Elsevier Inc. Terms and Conditions

2. Figure 1
Cellular Metabolism and the Production of Metabolic Cofactors for Acetylation and Methylation Reactions
A schematic depicting the major metabolic pathways involved in the production of metabolites that act as cofactors for histone deacetylation and acetylation and histone/DNA demethylation and methylation. Note that several intermediate steps have been excluded for clarity.
Cell Stem Cell  , DOI: ( /j.stem )
Copyright © 2015 Elsevier Inc. Terms and Conditions

3. Figure 2
Metabolites as Essential Cofactors in the Epigenetic Regulation of Transcription
(A) Acetylation of histones is achieved via the actions of histone acetyltransferases (HATs), which attach an acetyl group to lysine residues in a reaction that releases co-enzyme A. In contrast, histone deactylation is regulated via HDAC proteins, including the Sirtuin family. Sirtuins are dependent on a readily available pool of NAD+ for their deacetylase activity and produce NAM and 2'-O-Acetyl-ADP-Ribose.
(B–D) Methylation of either histone proteins or DNA is achieved via the attachment of a methyl group (from SAM) to either lysine or arginine residues in a reaction mediated via HMTs (B and C) or DNMT (D). Histone demethylation can occur via the actions of (B) the LSD family of demethylases, which require FAD as a cofactor, or (C) the JHDM family, which require αKG as a cofactor. The TET family of DNA demethylases similarly require αKG for their activity (D).
Cell Stem Cell  , DOI: ( /j.stem )
Copyright © 2015 Elsevier Inc. Terms and Conditions

4. Figure 3
Stem Cell Metabolism during Lineage Commitment and Reprogramming
This diagram attempts to collate our current knowledge regarding metabolism and the processes of lineage commitment and reprogramming in (A) ESCs and (B) ASCs (using MuSCs as an example). The position of each cell type is correct relative to its nearest neighbor; however, the position of reprogrammed pluripotency is speculative.
Cell Stem Cell  , DOI: ( /j.stem )
Copyright © 2015 Elsevier Inc. Terms and Conditions