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Solvent Influence on Base Stacking
Jan Norberg, Lennart Nilsson Biophysical Journal Volume 74, Issue 1, Pages (January 1998) DOI: /S (98) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 1 Free energy surfaces of stacking for the ribodinucleoside monophosphate rAprA in CHCl3 (——), DMSO (– – –), MeOH (– · – · –), and aqueous (·····) solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 2 Free energy surfaces of stacking for the deoxyribodinucleoside monophosphate dTpdT in CHCl3 (——), DMSO (– – –), MeOH (– · – · –), and aqueous (·····) solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 3 Root mean square atomic deviations as a function of time for all heavy atoms of the ribodinucleoside monophosphate rAprA in (a) CHCl3, (b) DMSO, (c) MeOH, and (d) aqueous solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 4 Root mean square atomic deviations versus time for all heavy atoms of the deoxyribodinucleoside monophosphate dTpdT in (a) CHCl3, (b) DMSO, (c) MeOH, and (d) aqueous solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 5 The time evolution of the distance between the glycosidic nitrogen base atoms (——), and the angle θ (·····) between the normal vectors of the bases for the ribodinucleoside monophosphate rAprA in (a) CHCl3 and (b) DMSO. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 6 The time evolution of the distance between the glycosidic nitrogen base atoms (——) and of the angle θ (·····) between the normal vectors of the bases for the ribodinucleoside monophosphate rAprA in (a) MeOH and (b) aqueous solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 7 The time evolution of the distance between the glycosidic nitrogen base atoms (——) and of the angle θ (·····) between the normal vectors of the bases for the deoxyribodinucleoside monophosphate dTpdT in (a) CHCl3 and (b) DMSO. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 8 The time evolution of the distance between the glycosidic nitrogen base atoms (——) and of the angle θ (·····) between the normal vectors of the bases for the deoxyribodinucleoside monophosphate dTpdT in (a) MeOH and (b) aqueous solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 9 Accessible surface area versus time for the ribodinucleoside monophosphate rAprA in (a) CHCl3, (b) DMSO, (c) MeOH, and (d) aqueous solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 10 Accessible surface area versus time for the deoxyribodinucleoside monophosphate dTpdT in (a) CHCl3, (b) DMSO, (c) MeOH, and (d) aqueous solution. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 11 Pseudorotation phase angle as a function of time for the ribodinucleoside monophosphate rAprA in CHCl3 for (a) 5′ moiety and (b) 3′ moiety; in DMSO for (c) 5′ moiety and (d) 3′ moiety; in MeOH for (e) 5′ moiety and (f) 3′ moiety; and in H2O for (g) 5′ moiety and (h) 3′ moiety. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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Figure 12 Pseudorotation phase angle as a function of time for the deoxyribodinucleoside monophosphate dTpdT in CHCl3 for (a) 5′ moiety and (b) 3′ moiety; in DMSO for (c) 5′ moiety and (d) 3′ moiety; in MeOH for (e) 5′ moiety and (f) 3′ moiety; and in H2O for (g) 5′ moiety and (h) 3′ moiety. Biophysical Journal , DOI: ( /S (98) ) Copyright © 1998 The Biophysical Society Terms and Conditions
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