1. Genomic landscapes of the two typical NEs found in this study.
Genomic landscapes of the two typical NEs found in this study.A, Both evidence types, transcriptomics and proteomics, support the encoding regions located upstream of the of the Os12t gene. A screen shot is obtained from Gramene, showing the genomic information of position – on rice chromosome 12. The track names on the left illustrate evidence from different sources, including predicted genes, NEs and novel peptides. On the right, the genomic landscape for the gene Os12t from a theoretical prediction and official annotation, and the location of the transcripts and peptides identified on the same gene based on the official annotation and the NEs. B, A screen shot is obtained from Gramene, showing the genomics information of – on rice chromosome 3. The three novel peptides and especially the junction peptide (NTLYVGGLAEEVDEK) suggest a novel encoding region and confirmed its junction site.
Zhe Ren et al. Mol Cell Proteomics 2019;18:86-98
© 2019 Varland et al.