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Geometric morphometrics and its uses
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Where is it used? Evolution To quantify shape
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What is it? Deals with the study of shape
Homologous points represent shape changes Why homologous landmarks?
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Evolution What can we do with shape? Cladogram Phenogram
The difference?
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Cladistics Shared characteristics Primitive [0] Intermediate [1]
Derived [2] Building of set of characteristics – up to hundreds of characteristics
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Phenetics Measurements
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Drawing of trees in phenetics Procrustes distances
Used to produce phenograms REASONS: In shape space Only available distances that represent the actual distances between taxa or specimens All other values are approximations of these distances
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Lets go back to GM What is it – phenetics Chosen set of landmarks
Reference build from landmarks
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landmarks
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Reference configuration (mean shape)
Only one reference for a data set Identifies the tangent point in Euclidean space
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What can you get? Thin-plate splines Relative warp analysis
Ultimately phenogram = Quantify shape and evolution
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Thin-plate splines Perpendicular grid Mean shape = perfect grid
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Relative warp analysis
PCA of the covariance matrix of the partial warp scores First two relative warps plotted onto each other - indicative of the most variation between the taxa/specimens Picture the relative positions of the taxa/specimens
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Another example
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Male consensus female consensus
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males females
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Procrustes distance matrix
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Phenogram
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Cladogram: evolutionary
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What do you use? Tps series of programs Tpsdig Tpsrelw Tpssplin
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