1. Volume 12, Issue 5, Pages 547-556 (May 2000)
Junctional Biases in the Naive TCR Repertoire Control the CTL Response to an Immunodominant Determinant of HSV-1 
Morgan E Wallace, Michelle Bryden, Stephen C Cose, Richard M Coles, Ton N Schumacher, Andrew Brooks, Francis R Carbone 
Immunity 
Volume 12, Issue 5, Pages (May 2000)
DOI: /S (00)80206-X

2. Figure 1
gB-Specific TCRVβ10+ Cells Represent a Diverse Population with a Conserved Junctional Region
These gB-specific Vβ10+ CDR3 sequences were obtained from cultured T cell lines and T cell hybrids (Cose et al. 1995; Turner et al. 1996; unpublished data). Jβ element usage was determined by comparison with known genomic sequences (Gascoigne et al. 1984; Malissen et al. 1984) and is designated in the far right-hand column. The CDR3 positions 3 and 4 are boxed and the conserved tryptophan-glycine (WG) doublet is highlighted in boldface type. The corresponding DNA sequences are available from GenBank under accession numbers AF224105–AF
Immunity  , DOI: ( /S (00)80206-X)

3. Figure 2
D and J Element Usage in the gB-Specific and Naive Vβ10+ T Cell Subsets
(A) Vβ10+ TCR sequences isolated from both naive (81 sequences) and immune mice (56 sequences) were analyzed for their Jβ element usage. J element usage was determined by comparison with known genomic sequences for these elements (Gascoigne et al. 1984; Malissen et al. 1984). The graph shows the number of sequences from both populations containing each J element. Naive sequences are shown in hatched bars and gB-specific sequences in black bars. These sequences are available from GenBank under accession numbers AF224161–AF (naive sequences) and AF224105–AF (gB-specific sequences).
(B) Dβ element usage was determined from the naive and gB-specific TCR cDNA sequences by comparison with the known germline sequences (Siu et al. 1984) (listed in [C]). Naive sequences are shown in hatched bars and gB-specific sequences are represented as closed bars. Only sequences where the Dβ-remnant could be readily identified were included in this analysis.
(C) The top panel shows the DNA sequences of each of the germline D elements with the predicted amino acid sequences encoded by each reading frame (denoted as RF1-3). The graph (bottom panel) shows the number of sequences in the naive Vβ10+ population that use each of the D element reading frames. Only sequences where D element reading frame usage could be determined were included in this analysis.
Immunity  , DOI: ( /S (00)80206-X)

4. Figure 3
CDR3 Positions 3 and 4 Show a Bias toward Germline D Element Coding
Naive TCRVβ10+ sequences were analyzed to determine the origin of amino acids appearing at each position of the CDR3 loop. The CDR3 positions are designated according to the notation of Chothia (Chothia et al. 1988), position 1 being 4 amino acids downstream from the conserved V element encoded cysteine. The coding of each amino acid was designated as either V element (open bars), N region (hatched bars), D element (closed bars), or J element (speckled bars) by comparison with the known genomic sequences for Vβ10 and the Dβ and Jβ elements (Gascoigne et al. 1984; Malissen et al. 1984; Siu et al. 1984; Hirama et al. 1991).
Immunity  , DOI: ( /S (00)80206-X)

5. Figure 4
C57BL/6β.NZW/NZW Mice Show a Consistent Loss of the Vβ10+ Population from the gB-Specific Response
Lymph node cells isolated from mice of all three TCR genotypes 5 days postinfection were triple labeled with anti-CD8, anti-CD25 (IL-2R α chain), and anti-Vβ10 antibodies. The percentage of activated (CD25+) CTL or resting (CD25−) CTL expressing Vβ10 was calculated and the average percentage for each group of six to ten mice is shown ± one SD.
Immunity  , DOI: ( /S (00)80206-X)

6. Figure 5
The Number of gB-Specific Cells Is Decreased in TCRNZW/NZW Mice
Lymph node cells from C57BL/6β.B6/B6 and C57BL/6β.NZW/NZW mice immunized 5 days previously with HSV-1 were stained immediately ex vivo with anti-CD8 and gB-tetramer. The dot plots on the left show typical tetramer staining on CD8+ cells. The average percentage of tetramer-positive CD8+ T cells (R1) for each group of four to ten mice is indicated in the top left corner of each dot plot. The graph on the right provides a comparison of absolute numbers of tetramer-positive cells present in C57BL/6β.B6/B6 and C57BL/6β.NZW/NZW mice (average ± one SD).
Immunity  , DOI: ( /S (00)80206-X)

7. Figure 6
Vβ10 Expression and TCR Sequences in C57BL/6β.NZW/NZW and C57BL/6β.B6/B6 CTL Lines
(A) Cells stimulated in vitro with the MC57gB cell line for 3 weeks were stained with anti-CD8 and anti-Vβ10 antibodies. The average percentage of CD8+ T cells expressing Vβ10 is shown ± one SD, for each group of six to ten mice.
(B) Vβ10+ TCR sequences were derived from selected gB-specific T cell lines. The percentage of Vβ10+ T cells following this culture period is given in the column second from the left. Jβ usage was determined by comparison with known genomic sequences (Gascoigne et al. 1984; Malissen et al. 1984) and is indicated in the column second from the right, with the frequency of each sequence in the far right-hand column. These sequences are available from GenBank under the accession numbers AF224077–AF
Immunity  , DOI: ( /S (00)80206-X)