1. Phylogenetic tree of 170 Lactobacillus species.
Phylogenetic tree of 170 Lactobacillus species. A phylogenetic tree was constructed for 170 representative Lactobacillus species based on the pyruvate kinase gene sequence for each genome. The colors of the groups follow those previously described (38): Lactobacillus animalis group is indicated in purple, Lactobacillus vaginalis group in green, Lactobacillus buchneri group in red, Lactobacillus rhamnosus group in yellow, Lactobacillus acidophilus group in maroon, and Lactobacillus gasseri group in blue. The inner metadata layer maps lifestyle designations as described by Duar et al. (20). The outer metadata layer maps the presence or absence of BSH and PVA proteins with respect to each of the 170 Lactobacillus species. Details of the reference strains used for each species and the metadata are located in Table S1.
Sarah O’Flaherty et al. mSphere 2018; doi: /mSphere