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CNS BBB Library ChemDiv Inc.
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Knowledge Mining Sources
PubChem Database Thomson Integrity Scientific publication & Patents ( ) Protein Data Bank SciFinder
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Knowledge Progression & Selection
3 Reference Compounds > 20K ► 2D-Topological analogues ► Kohonen-based modeling ► BBB profiling CNS Library >17K ► 2D-clustering procedure ► isosteric and bioisosteric morphing ► singeltones assignment ► >600 Templates Design ► Focus on novel chemistry ► MedChem Filters FOCUS ON NOVEL CHEMISTY CNS-active agents claimed since 2010
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Reference Compounds (Examples)
Disclosed since 2010
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Methodology for Compound Selection
Kohonen-based in silico modeling Ref cmpds: >600 molecules with exp. determined BBB permeability BBB Permeability av. classification power: 87% Descriptors: MW, LogP, HBA, HBD, Sp3, Zagreb, PSA, Ss GREEN – BBB(+) ref cmpds BLUE – BBB(-) ref cmpds Points – compounds from CNS library. More than 90% are localized in BBB(+) areas or in proximity to the BBB(+)-associated neurons of high priority
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Descriptor Distributions
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Validation of CNS Library ChemDiv’s Design & Activity (PubMed Examples)
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CNS Library Statistics
Diversity in Heterocycles: 1085 unique heterocycles Clusters (Tanimoto metrics, min cmpds per cluster – 10, similarity threshold 0.6): 397 Singeltones: 11245 Av. structures in cluster: 15 Screens: 11938 Diversity: 0.85 Basic aliphatic nitrogen: 42.5% cmpds Diversity Plot
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Examples of Scaffolds 11
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Examples of Compounds 12
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