1. BIMS (Breeding Information Management System)
for efficient management of phenotypic and genotypic data
Sook Jung, Taein Lee, Chun-Huai Chen, Ksenija Gasic, Todd Cambell and Dorrie Main
Connecting Crop Phenotype and Genotype Data workshop Workshop
2018 PAG Annual Conference,
Jan 13-17, San Diego, CA

2. Vision
To provide individual breeders with a secure and comprehensive online breeding management system which will allow them to:
Store, manage, archive and analyze their private breeding program data
Fully integrate their data with publicly available genomic, genetic and breeding data in the community database
Manage data from the Field Book App, an android app for collecting phenotype data in the field
Utilize their integrated pedigree, phenotype and genotype data in making breeding decisions
To make it available for any Tripal-based crop/animal databases to implement

3. Components Archive Manage Breeding Data Import, Edit and Download
Search and Compare
Field Book App (app for collecting phenotype) Management
Data Analysis Tools
Breeding Decision Tools

4. Manage Breeding – Manage Program
In manage program section, you can edit information on your program and also add members and give them privilege to read or read and write.
Add members and give them privilege to read or read/write

5. Manage Breeding – Manage Trials/Cross
View all crosses.

6. Manage Breeding – Manage Trials/Cross
Clicking on a cross/trial provides data selectable by trait, stats about the trait and access to view/ download all the data for the cross/trial.

7. Data Import – Upload data from Templates
In data upload, files can be uploaded. The status of the upload is shown. The history of files uploaded is being added with submission details.

8. Data Import - Templates
In data import, templates for each type of data are available for download in template list page.

9. FieldBook App Management – upload data in FB output file
Upload trait evaluation data collected with the Field Book App to BIMS

10. Search Accession
Search accessions by any combination of properties and trait values

11. Future Development
Search by genotype (raw SNP genotype and/or trait-associated allele)
Generate individual accession report
Data editing
Breeding decision tools

12. Funding and Acknowledgement