1. Normal-Modes-Based Prediction of Protein Conformational Changes Guided by Distance Constraints 
Wenjun Zheng, Bernard R. Brooks 
Biophysical Journal 
Volume 88, Issue 5, Pages (May 2005)
DOI: /biophysj
Copyright © 2005 The Biophysical Society Terms and Conditions

2. Figure 1
Summary of results for transition (1cll→1ctr). Panel a shows the overlap between the computed and the measured conformational changes versus the number of pairwise distance constraints. Panel b (panel c) shows the overlap between the computed conformational change and mode No. 3 (No. 4) versus the number of pairwise distance constraints. Line with pluses, result for the ideal test; horizontal line, the maximal overlap between any single mode and the measured conformational change; x-marks with error bars, result for the nonideal test 1, where the error bar shows 1 SD.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2005 The Biophysical Society Terms and Conditions

3. Figure 2
Summary of results for transition (1ddt→1mdt). Panel a shows the overlap between the computed and the measured conformational changes versus the number of pairwise distance constraints. Panel b shows the overlap between the computed conformational change and mode No. 2 versus the number of pairwise distance constraints. Line with pluses, result for the ideal test; horizontal line, the maximal overlap between any single mode and the measured conformational change; x-marks with error bars, result for the nonideal test 1, where the error bar shows 1 SD.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2005 The Biophysical Society Terms and Conditions

4. Figure 3
Summary of results for transition (1ypt→1yts). Panel a shows the overlap between the computed and the measured conformational changes versus the number of pairwise distance constraints. Panel b shows the overlap between the computed conformational change and mode No. 6 versus the number of pairwise distance constraints. Line with pluses, result for the ideal test; horizontal line, the maximal overlap between any single mode and the measured conformational change; x-marks with error bars, result for the nonideal test 1, where the error bar shows 1 SD.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2005 The Biophysical Society Terms and Conditions

5. Figure 4
Summary of results for transition (2lao→1lst). Panel a shows the overlap between the computed and the measured conformational changes versus the number of pairwise distance constraints. Panel b shows the overlap between the computed conformational change and mode No. 1 versus the number of pairwise distance constraints. Line with pluses, result for the ideal test; horizontal line, the maximal overlap between any single mode and the measured conformational change; x-marks with error bars, result for the nonideal test 1, where the error bar shows 1 SD.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2005 The Biophysical Society Terms and Conditions