1. New Data and Functionality in NRSP10 Databases
Sook Jung, Taein Lee, Chun-Huai Cheng, Jodi Humann, Jing Yu, Ping Zheng, Katheryn Bubble, Morgan Frank, Kristin Scott, Deah McGaughey, Heidi Hough, Ksenija Gasic, Todd Campbell, Don Jones, James Crabb, Kate Evans, Lisa DeVetter, Jim McFerson, Cameron Peace, Mike Khan, Meg Staton, Jill Wegrzyn, Stephen Ficklin, Albert Abbott, Dorrie Main

2. Databases for crop research
Outline
Databases for crop research
GDR, CottonGEN, CSFL, Citrus genome DB, Vaccinium genome DB
Demo of new functionality using GDR
Resources for database construction
MCL (Mainlab Chado Loader)
TripalMap
BIMS (Breeding Information Management System)

3. Databases for crop scientists
GDR, CottonGEN, CSFL, Citrus genome DB, Vaccinium genome DB
Host publicly available genomic, genetic and breeding data for 25 crops

5. citrusgenomedb.org

6. cottongen.org

7. coolseasonfoodlegume.org

8. vaccinium.org

9. Databases for crop scientists
New functionalities of GDR
Synteny viewer
New functionalities in search pages
Map viewer
BIMS (Breeding Information Management System)

10. New Synteny Viewer

12. GDR Search Interfaces

13. Search and Download

14. Customizing output in Gene Search

15. SNP Genotype Search
Download only polymorphic results

16. Map Viewer

17. Map Viewer (zoom and link to marker page)

18. Map Viewer Control Pannel: choose maps for comparison
Change display settings

19. Map Viewer (compare maps)

20. BIMS (Breeding Information Management System)
To provide individual breeders with a secure and comprehensive online breeding management system
Details will be presented in the next presentation by Ksenija Gasic!

21. Resources for database construction
Tripal Extension modules from NRSP10 to share
TripalMap (Map Viewer): to be released soon
BIMS (Breeding Information Management System): to be released soon
Mainlab Tripal: customized display of data (gene, QTL, marker, etc)
Mainlab Chado Search: customized search pages
Mainlab Chado Loader: provide data templates and web interface for data loading

22. MCL User Interface: templates

23. MCL User Interface: upload data

24. Future Development Continue to integrate genomic/genetic/breeding data
Site-wide search
Bio-Mart type search/download tools
Further development of BIMS and TripalMap
All these are being developed as Tripal Modules

25. The Team
Finally, I’d like to thank the organizations listed here for providing funding to support CottonGen.
If you have any questions or suggestions, please don’t hesitate to use the contact form on the website to contact us or catch us in person during the conference
Any Questions?

26. Funding and Acknowledgement

27. Thank you!