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Figure 1. TEM images of the strain RSP50

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1 Figure 1. TEM images of the strain RSP50
Figure 1. TEM images of the strain RSP50. Thylakoids (T), carboxysomes (C) and electron-rich structures (ERS) are ... Figure 1. TEM images of the strain RSP50. Thylakoids (T), carboxysomes (C) and electron-rich structures (ERS) are labelled. The scale bar indicates a length of 500 nm. Unless provided in the caption above, the following copyright applies to the content of this slide: © FEMS 2018.This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( FEMS Microbiol Ecol, Volume 94, Issue 12, 05 September 2018, fiy182, The content of this slide may be subject to copyright: please see the slide notes for details.

2 Figure 2. Phylogenomic placement of strain RSP50 based on 239 conserved single-copy genes. Sequences were retrieved ... Figure 2. Phylogenomic placement of strain RSP50 based on 239 conserved single-copy genes. Sequences were retrieved from all lineages available to date that represent the ecotypes of Prochlorococcus. Strain RSP50 is shown in red. Branches with bootstrap values ≥90% are indicated with a solid black circle, while the scale bar indicates an estimated sequence divergence of 3%. Strains belonging to Synechococcus subcluster 5.1A were used as an outgroup. Unless provided in the caption above, the following copyright applies to the content of this slide: © FEMS 2018.This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( FEMS Microbiol Ecol, Volume 94, Issue 12, 05 September 2018, fiy182, The content of this slide may be subject to copyright: please see the slide notes for details.

3 Figure 3. Venn diagram of gene clusters
Figure 3. Venn diagram of gene clusters. The number of genes present in one or more genomes of the 24 HL-adapted ... Figure 3. Venn diagram of gene clusters. The number of genes present in one or more genomes of the 24 HL-adapted strains and 19 LL-adapted strains (see Table S1 for list of genomes used) and strain RSP50 are shown inside the circles. The number of unique genes found only in strain RSP50 (59) is also shown. Unless provided in the caption above, the following copyright applies to the content of this slide: © FEMS 2018.This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( FEMS Microbiol Ecol, Volume 94, Issue 12, 05 September 2018, fiy182, The content of this slide may be subject to copyright: please see the slide notes for details.

4 Figure 4. (A) Gene neighborhood diagram showing genes in close proximity to glycerol-3-phosphate dehydrogenase (black ... Figure 4. (A) Gene neighborhood diagram showing genes in close proximity to glycerol-3-phosphate dehydrogenase (black arrows). Grey arrows denote annotated flanking genes and white arrows denote hypothetical/putative or uncharacterized genes. APRTase: adenine phosphoribosyl-transferase, LysM: peptidoglycan-binding protein, ALDH: aldehyde dehydrogenase, TR: transcriptional regulator, DHQD: 3-dehydroquinate dehydratase, stpA: glucosylglycerol-phosphate phosphatase. (B) The phylogenetic time tree for glycerol-3-phosphate dehydrogenase. The tree was generated using the Reltime method in MEGA v7.0 (Kumar, Stecher and Tamura 2016). The gene from RSP50 is colored in red and the outgroup (Cyanobium sp. PCC7001) is colored in grey. Numbers on branches are relative times of divergence between lineages. The scale indicates divergence time of genes (Million Years Ago). Unless provided in the caption above, the following copyright applies to the content of this slide: © FEMS 2018.This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( FEMS Microbiol Ecol, Volume 94, Issue 12, 05 September 2018, fiy182, The content of this slide may be subject to copyright: please see the slide notes for details.

5 Figure 5. Expression patterns of the psbA gene (photosystem Q protein) and unique genes discussed in this study: (A) ... Figure 5. Expression patterns of the psbA gene (photosystem Q protein) and unique genes discussed in this study: (A) photosystem Q protein (psbA), (B) glucosylglycerol-phosphate synthase (ggpS), (C) glycerol dehydrogenase (gpsA) and (D) trehalose synthase (treS). Colored lines represent different depths in the water column. The white areas represent early and late light phases of the diel cycle while grey areas represent the dark phase. Unless provided in the caption above, the following copyright applies to the content of this slide: © FEMS 2018.This article is published and distributed under the terms of the Oxford University Press, Standard Journals Publication Model ( FEMS Microbiol Ecol, Volume 94, Issue 12, 05 September 2018, fiy182, The content of this slide may be subject to copyright: please see the slide notes for details.

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