1. Key CottonGen Features For more information contact:
Available Data
Genomes of G. arboreum, G. barbadense, G. hirsutum, and G. raimondii
573,381 markers
109 genetic maps
4,923 QTLs
12,337 images
17,640 germplasm
25,227,605 genotype scores
383,431 phenotype scores
Key CottonGen Features
Easy-to-use search interfaces to retrieve data on markers, genes, transcripts, sequences, and traits
Synteny Viewer with nine genome comparisons and ortholog data
MapViewer for interactive viewing and comparisons of genetic maps
BIMS, a private breeding data management and analysis system
Assembled and annotated reference transcriptome (RefTrans) searchable using BLAST
PathwayCyc for G. raimondii and G. hirsutum genomes
Genomic, Genetic and Breeding Resources for Cotton Research Discovery and Crop Improvement
Available Tools
BIMS for Breeders
BLAST
CottonCyc
JBrowse
Map Viewer
Primer3
Synteny Viewer
Supported by:
Cotton Incorporated
USDA NIFA NRSP10
Bayer
Corteva Agriscience™
Southern Association of Agricultural Experiment Station Directors
USDA-ARS Washington State University
For more information contact:
Jing Yu
Dorrie Main
@CottonGen_news

2. Trait Descriptors Standard and Images
Cotton Trait Ontology
Genomes
MapViewer
Synteny
BIMS, a Breeders Tool
Trait Descriptors Standard and Images
CottonCyc