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Standard (Sanger) sequencing

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Presentation on theme: "Standard (Sanger) sequencing"— Presentation transcript:

1 Standard (Sanger) sequencing
Random ddNTP termination. Template Primer Label can be added to the: Primer ddNTP –or- Incorporated dNTPs

2 454 sequencing (images by Roche)
Sample Input and Fragmentation: Genomic DNA or BACs are fractionated into small, 300- to 800-basepair fragments Library Preparation: Short adaptors (A and B) - specific for both the 3' and 5' ends - are added to each single stranded fragment. One Fragment = One Bead: Each fragment of the single-stranded DNA library is immobilized individually onto beads in a water-in-oil mixture. emPCR (Emulsion PCR) Amplification: Each unique fragment is amplified in parallel to several million per bead. One Bead = One Read: The clonally amplified fragments are loaded onto a PicoTiterPlate device for sequencing. Only one bead per well. Auto fluidics flows individual nucleotides in a fixed order across the hundreds of thousands of wells containing one bead each. Addition of a nucleotide results in a chemiluminescent signal.

3 Solexa sequencing I Series of images taken from www.illumina.com

4 Solexa sequencing II “Solexa sequencing”

5 Solexa sequencing III “Solexa sequencing”

6 Rubber sequencing (2010 estimate)

7 Data overload link


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