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Published byЛидия Романова Modified over 5 years ago
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CyberShake Study 2.2: Computational Review Scott Callaghan 1
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Computational Goals 269 CyberShake sites on Kraken with existing SGTs
47 complete, 221 remaining, 1 lost Produce seismograms, PSA values, hazard curves Establish Kraken / Cray architecture as platform for CyberShake
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Study Goal Map
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Inputs 221 sets of SGTs + MD5 sums Rupture Geometries 5 on HPC
184 on Ranger disk 31 on Ranch archive Will need to be staged back to Ranger About 8.5 TB Rupture Geometries 14,000 files 1.5 GB
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Outputs Files Database Access 116 M seismograms, 116 M PSA files
2.5 TB (2.1 TB new) 350,000 workflow files 1.3 TB (1.1 TB new) Small number of curves, maps Database 350 M entries (37% increase) About 40 GB Access Hazard curves, maps posted on web site PSA values in DB Seismograms on disk
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Computing Environment/Resources
Kraken nodes Pegasus PMC SGT extraction code Memcached In-memory rupture variation generation Seismogram/PSA code Combined CyberShake codes tagged in SVN
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Computing Resources 1.2M Kraken SUs, ~5M SUs available
Local disk space 3.2 TB (additional) required 4.8 TB available on scec-02 Duration Start 10/8 (with review approval) ~2 months (dependent on Kraken queue, I/O) Personnel Scott Request help from Pegasus group when needed
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Reproducibility Science code tagged in SVN
Metadata captured in database SGTs long-term Ranger decommissioned in Feb Either archive or throw away and regenerate
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Metrics Calculate metrics previously highlighted in papers and posters, especially: Average makespan Parallel speedup Utilization Tasks/sec Delay per job SI2 metrics Number of hazard curves Compare metrics, determine improvement
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Open Issues / Risk Analysis
Kraken I/O Depending on file system performance, runtime is variable by a factor of 3 Kraken gridmanager Support for load? SUs Uncertain about usage of other SCEC users Statistics gathering Have had issues with pegasus-monitord in the past May have to populate DB after workflow is complete
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