Presentation is loading. Please wait.

Presentation is loading. Please wait.

Phylogenetic tree of 38 Pseudomonas type strains, based on a concatenated nine-gene MLST analysis. Phylogenetic tree of 38 Pseudomonas type strains, based.

Published byJanusz Szczepański Modified over 5 years ago

Similar presentations

Presentation on theme: "Phylogenetic tree of 38 Pseudomonas type strains, based on a concatenated nine-gene MLST analysis. Phylogenetic tree of 38 Pseudomonas type strains, based."— Presentation transcript:

1 Phylogenetic tree of 38 Pseudomonas type strains, based on a concatenated nine-gene MLST analysis.
Phylogenetic tree of 38 Pseudomonas type strains, based on a concatenated nine-gene MLST analysis. The strains selected have full-genome sequences available through public databases. The MLST analysis was performed using nine housekeeping genes (encoding DnaE, PpsA, RecA, RpoB, GyrB, GuaA, MutL, PyrC, and AcsA), with E. coli strain K-12 used as the outgroup. A maximum likelihood tree was calculated in the online version of MAFFT (209, 210) and visualized with the software program Archaeopteryx (211). The confidence intervals after 1,000 bootstrap resamplings are indicated in red, and the branch distances are indicated in black. The bar indicates sequence divergence. P. fluorescens clade destinations are based on those proposed previously (49). Brittan S. Scales et al. Clin. Microbiol. Rev. 2014; doi: /CMR

Download ppt "Phylogenetic tree of 38 Pseudomonas type strains, based on a concatenated nine-gene MLST analysis. Phylogenetic tree of 38 Pseudomonas type strains, based."

Similar presentations

Supplementary Fig. S1. 16S RNA Neighbor-joining (NJ) tree of Brevibacterium metallicus sp. nov. NM2E3 T (in bold) and related species of genus Brevibacterium.

Supplementary Fig. S1. 16S RNA Neighbor-joining (NJ) tree of Brevibacterium metallicus sp. nov. NM2E3 T (in bold) and related species of genus Brevibacterium.
Unrooted phylogenetic tree showing the relationship between the human SLC2A gene family for all 14 members created using PHYLIP 3.6 softwareDistance between.

Unrooted phylogenetic tree showing the relationship between the human SLC2A gene family for all 14 members created using PHYLIP 3.6 softwareDistance between.
F. Aujoulat, H. Marchandin, I. Zorgniotti, A. Masnou, E. Jumas-Bilak 

F. Aujoulat, H. Marchandin, I. Zorgniotti, A. Masnou, E. Jumas-Bilak 
Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.

Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number. Lack of phylogenetic conservatism of Bacillus anthracis plasmid copy number.
Maximum-likelihood phylogenetic tree of norovirus genomes belonging to genogroup GI, with the norovirus GII reference genome as an outlier. Maximum-likelihood.

Maximum-likelihood phylogenetic tree of norovirus genomes belonging to genogroup GI, with the norovirus GII reference genome as an outlier. Maximum-likelihood.
Phylogenetic tree of perA A2-domain DNA sequence.

Phylogenetic tree of perA A2-domain DNA sequence.
Comparative phylogenetic analysis of sapoviruses based on complete RdRp and VP1 nucleotide sequences. Comparative phylogenetic analysis of sapoviruses.

Comparative phylogenetic analysis of sapoviruses based on complete RdRp and VP1 nucleotide sequences. Comparative phylogenetic analysis of sapoviruses.
Volume 103, Issue 5, Pages (November 2000)

Volume 103, Issue 5, Pages (November 2000)
Phylogenetic tree of genome-sequenced bacterial strains from the Populus microbiome. Phylogenetic tree of genome-sequenced bacterial strains from the Populus.

Phylogenetic tree of genome-sequenced bacterial strains from the Populus microbiome. Phylogenetic tree of genome-sequenced bacterial strains from the Populus.
Genomes with Fe-S cluster assembly-related genes.

Genomes with Fe-S cluster assembly-related genes.
Functional range and environmental niches of the Pseudomonas genus, highlighting the broad distribution of the P. fluorescens species complex. Functional.

Functional range and environmental niches of the Pseudomonas genus, highlighting the broad distribution of the P. fluorescens species complex. Functional.
Maximum likelihood amino acid tree of the OXA-type β-lactamases found in Acinetobacter species. Maximum likelihood amino acid tree of the OXA-type β-lactamases.

Maximum likelihood amino acid tree of the OXA-type β-lactamases found in Acinetobacter species. Maximum likelihood amino acid tree of the OXA-type β-lactamases.
Development of a real-time PCR assay for the specific detection and identification of Streptococcus pseudopneumoniae using the recA gene  V. Sistek, M.

Development of a real-time PCR assay for the specific detection and identification of Streptococcus pseudopneumoniae using the recA gene  V. Sistek, M.
Maximum likelihood (ML) unrooted tree based on the full-length 16S rRNA genes (A) and 31 conserved single-copy genes (B) showing the phylogenetic position.

Maximum likelihood (ML) unrooted tree based on the full-length 16S rRNA genes (A) and 31 conserved single-copy genes (B) showing the phylogenetic position.
Whole-genome phylogeny of meat and human clinical Escherichia coli ST131 isolates. Whole-genome phylogeny of meat and human clinical Escherichia coli ST131.

Whole-genome phylogeny of meat and human clinical Escherichia coli ST131 isolates. Whole-genome phylogeny of meat and human clinical Escherichia coli ST131.
Discrimination between Streptococcus pneumoniae and Streptococcus mitis based on sorting of their MALDI mass spectra  L.N. Ikryannikova, A.V. Filimonova,

Discrimination between Streptococcus pneumoniae and Streptococcus mitis based on sorting of their MALDI mass spectra  L.N. Ikryannikova, A.V. Filimonova,
Phylogenetic tree based on 16S rRNA gene sequence comparisons over 1,260 aligned bases showing the relationship between species of the genus Actinomyces.

Phylogenetic tree based on 16S rRNA gene sequence comparisons over 1,260 aligned bases showing the relationship between species of the genus Actinomyces.
Phylogenetic tree constructed by the neighbor-joining method, showing the position of Peptostreptococcus species within Clostridium rRNA clusters XI, XIII,

Phylogenetic tree constructed by the neighbor-joining method, showing the position of Peptostreptococcus species within Clostridium rRNA clusters XI, XIII,
Schematic representation of the HAV genome organization, translation products, and regions used for amplification. Schematic representation of the HAV.

Schematic representation of the HAV genome organization, translation products, and regions used for amplification. Schematic representation of the HAV.
Phylogenetic tree showing generic and species positions based on Bayesian analysis of the nuclear ribosomal DNA 28S region (1,200 bp) of Schistosomatidae.

Phylogenetic tree showing generic and species positions based on Bayesian analysis of the nuclear ribosomal DNA 28S region (1,200 bp) of Schistosomatidae.

Similar presentations

Ads by Google