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Fig. 1. —Synteny analysis of melon chromosome 1 (brown) and cucumber chromosome 7 (green) based on melon-cucumber ... Fig. 1. —Synteny analysis of melon.

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Presentation on theme: "Fig. 1. —Synteny analysis of melon chromosome 1 (brown) and cucumber chromosome 7 (green) based on melon-cucumber ... Fig. 1. —Synteny analysis of melon."— Presentation transcript:

1 Fig. 1. —Synteny analysis of melon chromosome 1 (brown) and cucumber chromosome 7 (green) based on melon-cucumber ... Fig. 1. —Synteny analysis of melon chromosome 1 (brown) and cucumber chromosome 7 (green) based on melon-cucumber orthologous genes. Chromosomal regions where the density of TEs is higher than that of genes are shown as dark brown or green boxes for melon and cucumber, respectively. Red lines connect orthologous genes located in a gene-dense region in cucumber and in a TE-dense region in melon. Orange lines connect orthologous genes located in a gene-dense region in melon and in a TE-dense region in cucumber. Grey lines connect orthologous genes located in a gene-dense region or in TE-dense region in both genomes. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 6, 13 June 2018, Pages 1584–1595, The content of this slide may be subject to copyright: please see the slide notes for details.

2 Fig. 2. —Recombination in chromosome 1 of melon (left) and chromosome 7 of cucumber (right). Correlation of gene ... Fig. 2. —Recombination in chromosome 1 of melon (left) and chromosome 7 of cucumber (right). Correlation of gene density versus recombination rate in melon (a) and cucumber (b). Red spots represent the mean of the recombination rate on 100 separated bins with respect to gene density. Distribution of recombination rate along the chromosome in melon (windows of 500 kb) (c) and cucumber (windows of 100 kb) (d). The red line indicates cumulative recombination rate. The grey bars on top indicate TE-dense regions. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 6, 13 June 2018, Pages 1584–1595, The content of this slide may be subject to copyright: please see the slide notes for details.

3 Fig. 3. —Correlation of gene density versus nonsynonymous (a, b), synonymous (c, d), and silent (e, f) variability in ... Fig. 3. —Correlation of gene density versus nonsynonymous (a, b), synonymous (c, d), and silent (e, f) variability in melon (left) and cucumber (right). Red dots indicates the mean of the nonsynonymous variability on 100 separated bins with respect to gene density. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 6, 13 June 2018, Pages 1584–1595, The content of this slide may be subject to copyright: please see the slide notes for details.

4 Fig. 4. —Violin plots showing the distribution of nonsynonymous variability in gene-rich (right) and gene-poor (left) ... Fig. 4. —Violin plots showing the distribution of nonsynonymous variability in gene-rich (right) and gene-poor (left) regions for all genes (a), orthologous genes (b), and nonorthologous genes (c). The mean (dot), and the standard error intervals (vertical line) are also depicted for each category. All distributions are truncated at variability 0.02 (outliers are not shown). Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 6, 13 June 2018, Pages 1584–1595, The content of this slide may be subject to copyright: please see the slide notes for details.

5 Fig. 5. —Density plot of the ratio nonsynonymous/synonymous variability in nonorthologous genes (a, top) and ... Fig. 5. —Density plot of the ratio nonsynonymous/synonymous variability in nonorthologous genes (a, top) and orthologous genes (b, bottom). Genes are distinguished between those located in gene-poor or in gene-rich regions. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 6, 13 June 2018, Pages 1584–1595, The content of this slide may be subject to copyright: please see the slide notes for details.

6 Fig. 6. —Intrinsic Structural Disorder (ISD) for melon intergenic regions, melon proteins without ortholog in ... Fig. 6. —Intrinsic Structural Disorder (ISD) for melon intergenic regions, melon proteins without ortholog in cucumber and proteins with orthologous relationship in cucumber. Each category is divided into genes (or sequences in the case of intergenic control regions) located in gene-poor (orange) or gene-rich (blue) regions. Kolmogorov–Smirnov tests confirmed significant different distributions for gene-rich genes (or intergenic sequences) in each category and, on the other hand, for gene-poor genes (or intergenic sequences) in each category (P value < 0.01 in all cases). Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 6, 13 June 2018, Pages 1584–1595, The content of this slide may be subject to copyright: please see the slide notes for details.

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