Presentation is loading. Please wait.

Presentation is loading. Please wait.

Statistical chart of significantly differentially expressed genes

Published byTeodor Daniel Håkonsen Modified over 5 years ago

Similar presentations

Presentation on theme: "Statistical chart of significantly differentially expressed genes"— Presentation transcript:

1 Fig. 1. Statistical chart of significantly differentially expressed genes.
Statistical chart of significantly differentially expressed genes. A represents the control group, while B represents the experimental group. RPKM indicates the gene expression in samples. FDR (false discovery rate) is a method to determine the threshold of P-values in multiple tests: assume that we have picked R differentially expressed genes, in which S genes really show differential expression and the other V genes are false positive. We use ‘FDR ≤0.001 and the absolute value of log2Ratio ≥1’ as the threshold to determine the significance of differences in gene expression. Red represents the upregulated genes in the figure; green represents downregulated genes; blue represents genes without significant differences. J. H. Tian et al. Biology Open 2016;5: © Published by The Company of Biologists Ltd

Download ppt "Statistical chart of significantly differentially expressed genes"

Similar presentations

Estimating the False Discovery Rate in Genome-wide Studies BMI/CS 576 Colin Dewey Fall 2008.

Estimating the False Discovery Rate in Genome-wide Studies BMI/CS 576 Colin Dewey Fall 2008.
Figure 1 Hierarchical clustering (HCL) outcome of all tested samples with the expression profile of the case report set as unknown Hierarchical clustering.

Figure 1 Hierarchical clustering (HCL) outcome of all tested samples with the expression profile of the case report set as unknown Hierarchical clustering.
Activin reprograms macrophages toward a TAM‐like phenotype

Activin reprograms macrophages toward a TAM‐like phenotype
Validation of bioinformatic screening of a patient cohort.

Validation of bioinformatic screening of a patient cohort.
Figure 4. Differentially expressed miRNAs and isomiRNAs between different pairs of tissues The differentially expressed miRNAs and their isomiRNAs are.

Figure 4. Differentially expressed miRNAs and isomiRNAs between different pairs of tissues The differentially expressed miRNAs and their isomiRNAs are.
Functional enrichment of differentially expressed genes.

Functional enrichment of differentially expressed genes.
Boosting Signal-to-Noise in Complex Biology: Prior Knowledge Is Power

Boosting Signal-to-Noise in Complex Biology: Prior Knowledge Is Power
Bar plot representation of the transcriptomic changes in Δsaci_ptp and Δsaci_pp2a. Bar plot representation of the transcriptomic changes in Δsaci_ptp and.

Bar plot representation of the transcriptomic changes in Δsaci_ptp and Δsaci_pp2a. Bar plot representation of the transcriptomic changes in Δsaci_ptp and.
Pathway analysis of genes upregulated after RSV infection.

Pathway analysis of genes upregulated after RSV infection.
Fig. 2 Genotype-induced differential gene expression is different in MDMi cells compared to monocytes. Genotype-induced differential gene expression is.

Fig. 2 Genotype-induced differential gene expression is different in MDMi cells compared to monocytes. Genotype-induced differential gene expression is.
AZA treatment induces a distinct gene-expression pattern in stromal cells. AZA treatment induces a distinct gene-expression pattern in stromal cells. (A-C)

AZA treatment induces a distinct gene-expression pattern in stromal cells. AZA treatment induces a distinct gene-expression pattern in stromal cells. (A-C)
RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.

RNA-Seq analysis of CYR1 cells in the adaptation to acid pH.
Fig. 2. Effect of endurance training on gene expression, and protein content and activity in heart muscle. Effect of endurance training on gene expression,

Fig. 2. Effect of endurance training on gene expression, and protein content and activity in heart muscle. Effect of endurance training on gene expression,
Fig. 2. Outline of the two types of stimulus sequences employed in the analysis.(A) Environment information stimuli; (B) adaptation stimuli. Outline of.

Fig. 2. Outline of the two types of stimulus sequences employed in the analysis.(A) Environment information stimuli; (B) adaptation stimuli. Outline of.
Fig. 1. Representative images of the four cell lines using fluorescence microscopy. Representative images of the four cell lines using fluorescence microscopy.

Fig. 1. Representative images of the four cell lines using fluorescence microscopy. Representative images of the four cell lines using fluorescence microscopy.
Fig. 4. E-cadherin expression level affects monomer dynamics.

Fig. 4. E-cadherin expression level affects monomer dynamics.
Fig. 4. smc3 regulates the expression of cx43 in regenerating fins.

Fig. 4. smc3 regulates the expression of cx43 in regenerating fins.
Fig. 4. Seeding density modulates cell shape in both cell types

Fig. 4. Seeding density modulates cell shape in both cell types
Fig. 2. Proportion of motile objects and track length

Fig. 2. Proportion of motile objects and track length
A highly conserved six-amino-acid region in the C-terminal CT domain of MARCH8 is responsible for its ability to downregulate TfR. A highly conserved six-amino-acid.

A highly conserved six-amino-acid region in the C-terminal CT domain of MARCH8 is responsible for its ability to downregulate TfR. A highly conserved six-amino-acid.

Similar presentations

Ads by Google