1. Phylogenetic comparison among selected Pasteurella multocida and Haemophilus influenzae species with completed genome sequences.
Phylogenetic comparison among selected Pasteurella multocida and Haemophilus influenzae species with completed genome sequences. (A) Phylogenetic relationships among the strains based on 16S rRNA genes. The maximum-likelihood tree was calculated by using MEGA5 (575), based on the 16S rRNA genes from each of the indicated strains of P. multocida (Pm) or H. influenzae (Hi) with complete genome sequences. Nodes with bootstrap values of greater than 30% after 1,000 replicates are indicated. (B) Genome-wide comparison based on the fractions of common genes among the strains. The neighbor-joining tree was calculated by using MEGA5 with distances derived from the fraction of genes that are common between each pair of genomes and have >90% coverage in BLASTN alignment. (C) Genome-wide comparison based on the similarity among the common genes among the strains. The neighbor-joining tree was calculated by using MEGA5 with distances derived from the average BLASTN identity for common genes with >90% coverage in alignment.
Brenda A. Wilson, and Mengfei Ho Clin. Microbiol. Rev. 2013; doi: /CMR