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Volume 3, Issue 1, Pages (July 2016)

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1 Volume 3, Issue 1, Pages 99-101 (July 2016)
Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom  Neva C. Durand, James T. Robinson, Muhammad S. Shamim, Ido Machol, Jill P. Mesirov, Eric S. Lander, Erez Lieberman Aiden  Cell Systems  Volume 3, Issue 1, Pages (July 2016) DOI: /j.cels Copyright © 2016 Elsevier Inc. Terms and Conditions

2 Cell Systems 2016 3, 99-101DOI: (10.1016/j.cels.2015.07.012)
Copyright © 2016 Elsevier Inc. Terms and Conditions

3 Figure 1 Juicebox Enables Exploration of Contact Maps at Many Resolutions A screenshot of Juicebox zoomed in to 5-kb resolution on chromosome 3. The toolbar at the top allows users to quickly navigate between different chromosomes, views, normalizations, and resolutions. Users can load one-dimensional tracks and compare them to features seen in the heatmap. Two-dimensional features can be superimposed on the main map. Several peaks are annotated (cyan), each peak indicating the presence of a chromatin loop. A peak in the CTCF track, indicating CTCF binding, is seen at most loop anchors. At the top right, a mini-map shows the whole chromosome at low resolution. Below, hover text shows additional data for one of the highlighted peaks. Cell Systems 2016 3, DOI: ( /j.cels ) Copyright © 2016 Elsevier Inc. Terms and Conditions

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