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Fig. 1. —OR gene tree including 2,973 genes from seven ants, honeybee, and jewel wasp. The tree was reconstructed ... Fig. 1. —OR gene tree including 2,973.

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Presentation on theme: "Fig. 1. —OR gene tree including 2,973 genes from seven ants, honeybee, and jewel wasp. The tree was reconstructed ... Fig. 1. —OR gene tree including 2,973."— Presentation transcript:

1 Fig. 1. —OR gene tree including 2,973 genes from seven ants, honeybee, and jewel wasp. The tree was reconstructed ... Fig. 1. —OR gene tree including 2,973 genes from seven ants, honeybee, and jewel wasp. The tree was reconstructed using RAxML based on a MAFFT amino acid alignment and divided into 31 clades for subsequent analyses. Formicidae-specific clades are colored red (only ant sequences), Aculeatan-specific clades are colored purple (include bee sequences), and Hymenopteran clades are colored blue (include wasp sequences). Clades colored white were not tested for positive selection. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 9, 05 July 2018, Pages 2490–2500, The content of this slide may be subject to copyright: please see the slide notes for details.

2 Fig. 2. —A representative subfamily from the OR gene tree
Fig. 2. —A representative subfamily from the OR gene tree. (a) Maximum likelihood phylogeny of clade 22. Scale bar ... Fig. 2. —A representative subfamily from the OR gene tree. (a) Maximum likelihood phylogeny of clade 22. Scale bar represents 0.3 amino acid substitutions per site. Branches inferred to be under positive selection by the branch-site test are colored in red (q value < 0.1). Bootstrap support values are displayed throughout; branch numbers are written above the red branches only. Subtrees of species-specific gene duplications are marked by curly brackets. (b and c) Two sections of the sequence alignment showing positions under positive selection (posterior probability > 0.9) indicated by red arrows for the partitions by branch 9 (b) and branch 121 (c). Species name abbreviations according to table 1. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 9, 05 July 2018, Pages 2490–2500, The content of this slide may be subject to copyright: please see the slide notes for details.

3 Fig. 3. —Mapping of positively selected sites to a 3D structural model of insect ORs. (a) Ribbon diagram of DmOR85b ... Fig. 3. —Mapping of positively selected sites to a 3D structural model of insect ORs. (a) Ribbon diagram of DmOR85b is rainbow colored from the amino terminus (blue) to the carboxy terminus (red), with the seven transmembrane helices numbered. (b) Amino acids under selection in ≥6 branches of the gene tree are shown as spheres and colored orange (between 6 and 8 branches) or red (between 9 and 12 branches). Two clusters of positively selected sites are marked by ellipses. A region in TM3 that affects ligand activation based on the mutagenesis experiments in Drosophila melanogaster is marked by an arrow. (c and d) Top view (from the extracellular side) of (a) and (b), rotated 90<sup>°</sup> about the X axis. Unless provided in the caption above, the following copyright applies to the content of this slide: © The Author(s) Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact Genome Biol Evol, Volume 10, Issue 9, 05 July 2018, Pages 2490–2500, The content of this slide may be subject to copyright: please see the slide notes for details.

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