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A “datathon” model to support cross-disciplinary collaboration

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Presentation on theme: "A “datathon” model to support cross-disciplinary collaboration"— Presentation transcript:

1 A “datathon” model to support cross-disciplinary collaboration
by Jerôme Aboab, Leo Anthony Celi, Peter Charlton, Mengling Feng, Mohammad Ghassemi, Dominic C. Marshall, Louis Mayaud, Tristan Naumann, Ned McCague, Kenneth E. Paik, Tom J. Pollard, Matthieu Resche-Rigon, Justin D. Salciccioli, and David J. Stone Sci Transl Med Volume 8(333):333ps8-333ps8 April 6, 2016 Copyright © 2016, American Association for the Advancement of Science

2 Fig. 1. Sample snapshots. Sample snapshots. Shown are screen shots of the Jupyter Notebooks used in the Second International Critical Care datathon to facilitate sharing of queries and codes among the teams. (A) A custom Python package was developed to assist with transforming and analyzing data. (B) Notebooks simplified data exploration. (C) Data visualization. Jerôme Aboab et al., Sci Transl Med 2016;8:333ps8 Copyright © 2016, American Association for the Advancement of Science

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Fig. 1. Map showing the study catchment area in the East of England.
Fig. 4. The effect of single-dose rozanolixizumab on the concentration of IgG subtypes in healthy subjects. The effect of single-dose rozanolixizumab on.

Fig. 4. The effect of single-dose rozanolixizumab on the concentration of IgG subtypes in healthy subjects. The effect of single-dose rozanolixizumab on.
Fig. 6 Transmissibility of adiposity from humanized mice to germ-free recipients. Transmissibility of adiposity from humanized mice to germ-free recipients.

Fig. 6 Transmissibility of adiposity from humanized mice to germ-free recipients. Transmissibility of adiposity from humanized mice to germ-free recipients.
Fig. 7 Correlation of NHP and human ISGs.

Fig. 7 Correlation of NHP and human ISGs.
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Fig. 4. Peanut-specific TH2A cells are specifically targeted during immunotherapy. Peanut-specific TH2A cells are specifically targeted during immunotherapy.
Consolidated Standards of Reporting Trials flow diagram of VRC trial

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Fig. 2. Clinically actionable somatic genomic alterations in various tumor types. Clinically actionable somatic genomic alterations in various tumor types.
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Fig. 5. Microarray analysis of tumors treated by dabrafenib, trametinib, or the combination of dabrafenib and trametinib with pmel-1 ACT or mock ACT. Microarray.

Fig. 5. Microarray analysis of tumors treated by dabrafenib, trametinib, or the combination of dabrafenib and trametinib with pmel-1 ACT or mock ACT. Microarray.
Fig. 1. Schematic showing the shedding of tumor DNA from head and neck cancers into the saliva or plasma. Schematic showing the shedding of tumor DNA from.

Fig. 1. Schematic showing the shedding of tumor DNA from head and neck cancers into the saliva or plasma. Schematic showing the shedding of tumor DNA from.
Fig. 3. Comparison of prediction performance.

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Fig. 7 Bacterial dependency networks in IgA deficiency and HDs.

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Fig. 3 ROC curves of mCCNA1 and mVIM assayed in esophageal cytology brushings from control normal-appearing GE junctions versus BE and EAC cases. ROC curves.

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Fig. 2 Preserved long-term functionality of the TEHVs over 1-year follow-up as assessed by ICE and cardiac MRI flow measurements. Preserved long-term functionality.

Fig. 2 Preserved long-term functionality of the TEHVs over 1-year follow-up as assessed by ICE and cardiac MRI flow measurements. Preserved long-term functionality.
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