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A. The Solid State Classification of Solid Structures
Crystalline Solids = regular arrangement of components in 3 dimensions Amorphous Solids = disordered arrangement of components i. Will not be the focus of this chapter Glasses = “frozen solutions” are disordered, amorphous solids Quasicrystalline Solids—2011 Nobel Prize Crystal Structure Basics Crystal = a piece of a crystalline solid Lattice = 3-dimensional system of designating where components are Unit cell = smallest repeating unit of the lattice Examples: simple cubic, body-centered cubic, face-centered cubic
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Three different cubic unit cells and lattices
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B. Bravais Lattices = 14 possible basic crystal structure unit cell types
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C. X-Ray Analysis of Crystalline Solids
1. Diffraction = scattering of light by a crystal’s regular array of components a. Wavelength of light must be about the same as the spacing of units b. Constructive interference occurs when different distances traveled by the same wavelength of light is an integer multiple of l c. Destructive interference occurs elsewhere
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Diffractometer = computerized system to rotate crystal while shining X-rays at them and to record the diffraction data produced Diffraction pattern tells us about how far apart the components are Bragg Equation: nl = 2dsinq Lets us calculate the distance between crystal components Bragg’s awarded 1915 Nobel Prize for crystallography Example: find d if n = 1, l = 1.54 Å, q = 19.3o
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D. Types of Crystalline Solids
1. Ionic = ions at lattice points, held together by Coulombic attractions, NaCl 2. Molecular = molecules at lattice point, intermolecular forces, H2O 3. Atomic = atoms at lattice points a. Metallic Solids = non-directional covalent bonding, Copper metal b. Network Solids = strong, directional, covalent bonds, Diamond c. Group 8A Solids = noble gases in solid state, London forces only
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E. Growing Crystals Growing crystals is an art as much as a science
You have to try to grow crystals in order to grow crystals—hard work You can develop skills You have to have a certain amount of luck There are many methods for growing crystals For transition metal complexes, simple methods are often successful Slow Evaporation Diffusion of an insoluble solvent into a solution Demonstration
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F. Collecting X-Ray Diffraction Data
Select a good crystal Well-defined shape with flat faces Needs to be single; not a clump or “tree” Needs to be large enough (0.1mm x 0.1mm x 0.1mm) Mount the crystal on the Diffractometer Glass (amorphous) fiber Use viscous oil or epoxy glue to attach the crystal
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What you don’t want to see
Examples courtesy of the Smith group and the U. of Cincinnati
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Typical Hardware Camera Low Temperature Goniometer Detector Sample
Source(s)
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Crystal Examination
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Initial Diffraction pattern
What we expect to see:
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G. Solving the Structure
Calculate the Unit Cell Only a small amount of data is needed (a,b,c and a,b,g) If the computer can’t do it, the crystal is not good enough Can also tell if crystal is duplicate of known if unit cell is same Collect more data—how much depends on the kind of Bravais Lattice Poor crystals—want more data Great crystals—require less data G. Solving the Structure 1. Computer picks space group Sometimes it is wrong and has to be corrected by the crystallographer Picking the right space group can dramatically improve the results The space groups in three dimensions are made from combinations of the 32 crystallographic point groups with the 14 Bravais lattices which belong to one of 7 crystal systems. This results in a space group being some combination of the translational symmetry of a unit cell including lattice centering, and the point group symmetry operations of reflection, rotation and improper rotation (also called rotoinversion). Furthermore one must consider the screw axis and glide plane symmetry operations. These are called compound symmetry operations and are combinations of a rotation or reflection with a translation less than the unit cell size. The combination of all these symmetry operations results in a total of 230 unique space groups describing all possible crystal symmetries.
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Computer gives an initial “solve” where it assigns “peaks” of electron density to atoms in the formula you input Heavy atoms (Metals, S, P) are easy to assign C, N, O don’t have much difference Hydrogens usually don’t show up at all and are calculated in at the end Usually quite a few “peaks” and “holes” unaccounted for (and atoms) Simple Organics often give almost complete solves by computer Experienced crystallographer finishes the solve = “refinement” Assigns atoms to the peaks and “resolves” Indicators either get better or worse Keep working at this until you get an acceptable solve R1 < 0.10 (data used); wR2 < 0.20 (all data)
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