1. The Mobility of Phytochrome within Protonemal Tip Cells of the Moss Ceratodon purpureus, Monitored by Fluorescence Correlation Spectroscopy 
Guido Böse, Petra Schwille, Tilman Lamparter 
Biophysical Journal 
Volume 87, Issue 3, Pages (September 2004)
DOI: /biophysj
Copyright © 2004 The Biophysical Society Terms and Conditions

2. Figure 1
Setup. Schematic representation of the ConfoCor 2 setup for autocorrelation analysis. The 543-nm laser line of a helium-neon laser was reflected by a dichroic mirror (main beam splitter 543) and focused through an objective onto the sample. The fluorescence emission collected by the same objective was passed through a bandpass filter, focused, and recorded with an avalanche photodiode while reducing out-of-plane fluorescence by a pinhole. The fluorescence signal was software correlated and displayed online.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions

3. Figure 2
Principle of fluctuation analysis (a); representative data of a fluorophore containing a fluorescent trace of Alexa 488 (b); and a model autocorrelation curve (c). Entering and leaving of a fluorophore induces intensity fluctuations that are processed by autocorrelation analysis resulting in a curve such as info 1 for a diffusion time of τD=0.2ms. The average number of particles in the focus is found in G(t)−1 (info 2). The autocorrelation curve resulting from the diffusion is shown shaded. Internal dynamics such as triplet state or blinking give signals that result in a second curve (info 3). This adds up to the diffusion curve.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions

4. Figure 3
Fluorescence images of protonemal tip cells of C. purpureus after PEB/PCB feeding, apical region. (a and b) The phytochrome-chromophore deficient mutant ptr116, (a) 4μM PEB, (b) 4μM PEB and 10μM PCB, and (c) wild-type, 4μM PEB.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions

5. Figure 4
Schematical drawing of the experimental setup for FCS measurements. The protonemal tip cells of Ceratodon (not drawn to scale) have a diameter of 10–13μm and are ∼200μm long. The double-cone symbol indicates the location of the confocal volume for the autocorrelation measurements. Arrows show how the sample is moved during a z-scan. The xy position is chosen from the LSM image.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions

6. Figure 5
(a) Fluorescence-intensity profile of a z-scan through the apical region of a PEB-loaded ptr116 cell; (b) normalized FCS curves at four different z-positions of the cell (positions indicated in a). (c) Examples for fit functions obtained for diffusion times of 0.75 and 4.8ms.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions

7. Figure 6
(a) Fluorescence intensity and fraction of phytochrome with low mobility of three different cells plotted against the relative z-position. The fluorescence intensity is measured in the same focus used for FCS analysis; the profile gives the cell dimension in z-direction. The low-mobility fraction was determined by autocorrelation analysis and nonlinear least-square fit. Fixed diffusion times were used in a fit function with two components (see text). The relative contribution of the high- and low-mobility component were obtained from these fits. For cell 1 and cell 2, the measuring position was ∼6μm behind the tip, where the cell diameter in z-direction is ∼10μm. The measuring position of cell 3 was closer to the tip region; therefore, the diameter was only ∼5μm. (b) Fraction of low-mobility phytochrome, determined as in a, plotted against the relative intensity (see text). Data from seven different cells.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions

8. Figure 7
Fluorescence measurements with GFP in tip cells of the ptr116 mutant. The measurements were performed in the apical dome of GFP expressing tip cells ∼5μm from the tip. (a) Normalized autocorrelation traces from selected positions of the tip cell. See b for the position within the cell. (b) Fluorescence intensity profiles and autocorrelation τD values along the z axis of two different cells.
Biophysical Journal  , DOI: ( /biophysj )
Copyright © 2004 The Biophysical Society Terms and Conditions