1. General overview of the bioinformatic pipelines for the 16S rRNA gene microbial profiling and shotgun metagenomics.
General overview of the bioinformatic pipelines for the 16S rRNA gene microbial profiling and shotgun metagenomics. Starting from DNA extraction of a microbial community and subsequent sequencing, the pipeline generates taxonomic profiling of the microbiota and the reconstruction of microbial genomes with corresponding functional analyses of the genes.
Christian Milani et al. Microbiol. Mol. Biol. Rev. 2017; doi: /MMBR