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Published byHayden Stowell Modified over 9 years ago
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What is NESCent?
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Inspired by the National Center for Ecological Analysis and Synthesis What is NESCent?
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Downtown Durham, North Carolina National Evolutionary Synthesis Center
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Consortium of 3 Research Triangle Universities Director Kathleen Smith DUKE Associate Directors Cliff Cunningham DUKEResearch and Development Greg GibsonNC StateEducation and Outreach Joel KingsolverUNC Science and Synthesis Todd VisionUNC Science and Synthesis
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The In-House Community 15 Post-Doctoral Fellows 5 Sabbatical Faculty 3 Triangle Faculty (on teaching leaves)
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Synthesis Working Groups (NCEAS-Style) 12 people, meet several times Assumption … the data is out there! Meetings to Catalyze and Achieve Synthesis
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“Catalysis Meetings” 30 people around a central theme Lead to Grand Scale Research Collaborations Meetings to Catalyze and Achieve Synthesis
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What is Synthesis?
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Who is Occupying Real Estate in the Informatics Universe (and doing it well) Jump-Starting Evolutionary Databases Find “homes” for all data associated with submitted evolutionary papers
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Genotype Phenotype Vertical Integration (lots of data on single species) Horizontal Integration (smaller amounts of data for many individuals and species) Genomic Sequences Genomic Maps Quantitative Trait loci Gene Expression: Microarrays Gene Expression: In-situ Images Mutation Phenotypes 2D Images Sequences From Many Individuals Specimen Collection Data, GIS Phylogenetic Relationships Quantitative Morphometric Behavioral Matrix-Coded Morphological Behavioral Specimen and Character Images GENBANK Generic Model Systems (GMOD) Assembling Tree of Life MorphBank MorphoBank Digi-Morph TreeBase (GBIF) BarCode of Life DataBase (BOLD) Population Genetic Database PEET Taxonomic Databases CHRONOS PaleoBiology Database Taxonomic Name Databases VegBank FlyBase, TAIR
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Find “homes” for all data associated with submitted evolutionary papers Jump-Starting Evolutionary Databases
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Each with Unique Challenges Inhibiting Data Population Foster “Nascent” DataBases (Controlled Ontologies) MorphBank/ MorphBank Proliferation/ Confusion
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MorphBank/MorphoBank Summit: Neutral Site, LSID’s, Inter-operability Foster “Nascent” DataBases (Controlled Ontologies) MorphBank/ MorphBank Proliferation/ Confusion
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Each with Unique Challenges Inhibiting Data Population Foster “Nascent” DataBases (Controlled Ontologies) Population Genetic DataBase Coordinating Data Submission
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Data Submission Tools for Multiple Databases Foster “Nascent” DataBases (Controlled Ontologies) Population Genetic DataBase Coordinating Data Submission
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Each with Unique Challenges Inhibiting Data Population Foster “Nascent” DataBases (Controlled Ontologies) Etho-Source Ontology-Written Need Programmer!
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Wouldn’t it be great if all communities did this? Foster “Nascent” DataBases (Controlled Ontologies) Etho-Source Ontology-Written Need Programmer!
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Find “homes” for all data associated with submitted evolutionary papers Establish an evolutionary data registry (building on the ecological data registry) Jump-Starting Evolutionary Databases
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Data Centers Meta-Data Registry LSID’s to follow data to final “home” Wall of China Model-1
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Facilitate Evolutionary Model Systems (GMOD) INTEGRATE TAXONOMIC AND MODEL SYSTEMS ONTOLOGIES! Wall of China Model-2
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Targeted Sabbaticals and Working Groups INTEGRATE TAXONOMIC AND MODEL SYSTEMS ONTOLOGIES! Wall of China Model-2 Quentin Cronk Todd Vision Lincoln Stein Paula Mabee CTOL- Z-Fin
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Software Integration W. Maddison An “Economy” of Service Oriented Providers
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Genotype Phenotype Vertical Integration (lots of data on single species) Horizontal Integration (smaller amounts of data for many individuals and species) Genomic Sequences Genomic Maps Quantitative Trait loci Gene Expression: Microarrays Gene Expression: In-situ Images Mutation Phenotypes 2D Images Sequences From Many Individuals Specimen Collection Data, GIS Phylogenetic Relationships Quantitative Morphometric Behavioral Matrix-Coded Morphological Behavioral Specimen and Character Images GENBANK Generic Model Systems (GMOD) Assembling Tree of Life MorphBank MorphoBank Digi-Morph TreeBase (GBIF) BarCode of Life DataBase (BOLD) Population Genetic Database PEET Taxonomic Databases CHRONOS PaleoBiology Database Taxonomic Name Databases VegBank FlyBase, TAIR
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