Presentation is loading. Please wait.

Presentation is loading. Please wait.

8 seqs/day 96 seqs/2 hrs Bioinformatics for Genomics.

Published byKyle Ward Modified over 11 years ago

Similar presentations

Presentation on theme: "8 seqs/day 96 seqs/2 hrs Bioinformatics for Genomics."— Presentation transcript:

1 8 seqs/day 96 seqs/2 hrs Bioinformatics for Genomics

2 TAGAGCATCGATCGATGCTGCAGATGATGCTAGCATCGGCTAGGCGACG ATCTCGTAGCTA ATCTCGTAGCTAGCTACGACGTCTA ATCTCGTAGCTAGCTA ATCTCGTAGCTAG ATCTCGTAGCTAGC ATCTCGTAGCTAGCT ATCTCGTAGCTAGCTAC ATCTCGTAGCTAGCTACG ATCTCGTAGCTAGCTACGA ATCTCGTAGCTAGCTACGAC ATCTCGTAGCTAGCTACGACG ATCTCGTAGCTAGCTACGACGT ATCTCGTAGCTAGCTACGACGTC ATCTCGTAGCTAGCTACGACGTCT ATCTCGTAGCT A G C T A C G A C G T C T A

3 20 30 10 Random base calling at the beggining or the end of read (Phred < 10) Trimming (trim or trim_alt algorithms) Phred does the base calling chromatogram acgatctcgctagctgctactgtagccgcgattattcgcgatctacgtatatcgcgatcgatc Each base has assigned a chance of failure 1% = 0,01 = 10 -2 = Phred 20 Base calling & trimming

4 Start End

5 Goal: To document the presence of transcripts in a transcriptome [otorrin... in portuguese] EST = Expressed Sequence Tag Partial sequencing of transcripts in EST genome projects actgatcatctcgctgatgcgatc work

Download ppt "8 seqs/day 96 seqs/2 hrs Bioinformatics for Genomics."

Similar presentations

Warm Up Monday, January 7 1) 2) 3)

Warm Up Monday, January 7 1) 2) 3)
A: acceleration E: equilibrium Determine whether the following diagrams illustrate acceleration or equilibrium. Number your paper from 1 to 5 and answer.

A: acceleration E: equilibrium Determine whether the following diagrams illustrate acceleration or equilibrium. Number your paper from 1 to 5 and answer.
Uso da bioinformática na análise genômica. TAGAGCATCGATCGATGCTGCAGATGATGCTAGCATCGGCTAGGCGACG ATCTCGTAGCTA ATCTCGTAGCTAGCTACGACGTCTA ATCTCGTAGCTAGCTA ATCTCGTAGCTAG.

Uso da bioinformática na análise genômica. TAGAGCATCGATCGATGCTGCAGATGATGCTAGCATCGGCTAGGCGACG ATCTCGTAGCTA ATCTCGTAGCTAGCTACGACGTCTA ATCTCGTAGCTAGCTA ATCTCGTAGCTAG.
In the Pursuit of Optimal Sequence Trimming Parameters for EST Projects Fabiano C. Peixoto & J. Miguel Ortega LCC-CENAPAD A T G C BIOINFORMÁTICA UFMG.

In the Pursuit of Optimal Sequence Trimming Parameters for EST Projects Fabiano C. Peixoto & J. Miguel Ortega LCC-CENAPAD A T G C BIOINFORMÁTICA UFMG.
Supplemental Fig. 1. Type-specific distribution of GO terms (GOSlim, Biological Processes, Cellular Component, Molecular Function assigned to each type.

Supplemental Fig. 1. Type-specific distribution of GO terms (GOSlim, Biological Processes, Cellular Component, Molecular Function assigned to each type.
MRNA Transcript Expression in the Ear Shoot Apical Meristem and Correlation with Yield A Translational Genomics Experiment Utilizing Next-Generation Sequencing.

MRNA Transcript Expression in the Ear Shoot Apical Meristem and Correlation with Yield A Translational Genomics Experiment Utilizing Next-Generation Sequencing.
Science Jeopardy 10 20 30 40 10 20 30 40 10 20 30 40 >>>> 10 20 30 Topic 1 Topic 2 Topic 4 Topic 3 10 20 30 40 Topic 5.

Science Jeopardy >>>> Topic 1 Topic 2 Topic 4 Topic Topic 5.
Rate Laws. Rate = k [A] x [B] y [A] and [B] represent the concentrations of reactants x and y often (but not always) represent the coefficients in front.

Rate Laws. Rate = k [A] x [B] y [A] and [B] represent the concentrations of reactants x and y often (but not always) represent the coefficients in front.
RNA-seq library prep introduction

RNA-seq library prep introduction
Objective - To simplify expressions using the order of operations. Simplify each expression below. 1) 6 + 5(8 - 2) 2) 3) 4)

Objective - To simplify expressions using the order of operations. Simplify each expression below. 1) 6 + 5(8 - 2) 2) 3) 4)
RAPD Randomly Amplified Polymorphic DNA

RAPD Randomly Amplified Polymorphic DNA
Presented by Sam Annor Elma Stapic. Definition (by Elma) Background (by Sam) Advantages (by Elma) Disadvantages (by Sam) Conclusion.

Presented by Sam Annor Elma Stapic. Definition (by Elma) Background (by Sam) Advantages (by Elma) Disadvantages (by Sam) Conclusion.
The Human Genome 23 Pairs of Chromosomes About 30,000 Genes.

The Human Genome 23 Pairs of Chromosomes About 30,000 Genes.
UNIT 2: SOLVING EQUATIONS AND INEQUALITIES SOLVE EACH OF THE FOLLOWING EQUATIONS FOR y. # 1. - 2 x + 5 y = 15 + 2 x 5 y = 2 x + 15 55 y = 2 x + 15 5 y.

UNIT 2: SOLVING EQUATIONS AND INEQUALITIES SOLVE EACH OF THE FOLLOWING EQUATIONS FOR y. # x + 5 y = x 5 y = 2 x y = 2 x y.
Quality Control of Illumina Data Mick Watson Director of ARK-Genomics The Roslin Institute.

Quality Control of Illumina Data Mick Watson Director of ARK-Genomics The Roslin Institute.
Three cards numbered 4, 5, and 6 are in a bag. A card is randomly drawn and replaced. Then another card is drawn. What is the probability that the product.

Three cards numbered 4, 5, and 6 are in a bag. A card is randomly drawn and replaced. Then another card is drawn. What is the probability that the product.
Nested if-else Statements.  Should be indented to make the logic clear.  Nested statement executed only when the branch it is in is executed. For example,

Nested if-else Statements.  Should be indented to make the logic clear.  Nested statement executed only when the branch it is in is executed. For example,
Bottoms Up Factoring. Start with the X-box 3-9 Product Sum -6 -27.

Bottoms Up Factoring. Start with the X-box 3-9 Product Sum
Jeopardy Start Final Jeopardy Question Category 1Category 2Category 3Category 4Category 5 10 20 30 40.

Jeopardy Start Final Jeopardy Question Category 1Category 2Category 3Category 4Category
Back to menu 10 20 30 40 category 1 type you categories here– delete these instructions. Final jeopardy question.

Back to menu category 1 type you categories here– delete these instructions. Final jeopardy question.

Similar presentations

Ads by Google