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A model to explain K + -sensing of plant K out channels Supplemental Material to Johansson, Wulfetange, Porée, Michard, Lacombe, Sentenac, Thibaud, Mueller-Roeber, Blatt, Dreyer “ K + dependence of the Arabidopsis K + channel SKOR indicates an unique gating mechanism coupled to ion permeation ” dreyer@rz.uni-potsdam.de
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Supplemental Material, Johansson et al. In the following only those details of a plant K out channel are displayed which are important to explain the K + -sensing mechanism: The P-domain and the S6 segment of 2 (out of 4) subunits.
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Supplemental Material, Johansson et al. An open K out channel mediates K + efflux.
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open Supplemental Material, Johansson et al. Spontaneous (voltage-dependent) closing occurs via rearrangements of C-terminal parts of the S6 segment. closed
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openclosed Supplemental Material, Johansson et al. The ionic compositions of the pore and the cavity equilibrate with the external solution. When the external K + concentration is low also the occupancy of the pore by K + is low. low K + ext. high K + ext. When the external K + concentration is high also the occupancy of the pore by K + is high.
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openclosed low K + ext. high K + ext. Supplemental Material, Johansson et al. When the external K + concentration is high also the occupancy of the pore by K + is high. The pore is not flexible but rather rigid. Interactive forces between the pore (SKOR-M286) and S6 (SKOR-D312) induce then further conformational changes in S6 which stabilise the closed conformation.
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openclosed low K + ext. high K + ext. Supplemental Material, Johansson et al. These rearrangements reduce the interactive forces between the pore and S6. No further conformational changes in S6 are induced. When K + ext. is low the pore is not crowded with K + ions the pore is flexible and undergoes structural rearrangements (low-K + structure, Zhou et al., 2001, Nature 414, 43-48 ).
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openclosed low K + ext. high K + ext. Supplemental Material, Johansson et al. Spontaneous rearrangements of the C-terminal part of S6 “re-open” the channel. However, the “low-K + structure” of the pore does not allow K + flux.
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openclosed low K + ext. high K + ext. Supplemental Material, Johansson et al. The cavity is flushed by internal K +.
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openclosed low K + ext. high K + ext. Supplemental Material, Johansson et al. When the internal K + concentration is large enough, K + ions can alter the conformation of the pore (high-K + structure, Zhou et al., 2001, Nature 414, 43-48 ).
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openclosed low K + ext. high K + ext. Supplemental Material, Johansson et al. The K out channel mediates K + efflux again. open
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Summary
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Extracellular K + stabilises a closed conformation of plant K out channels. Supplemental Material, Johansson et al.
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The model explains mutant phenotypes: SKOR-M286L
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closed low K + ext. Supplemental Material, Johansson et al. open high K + ext. : C 2high low K + ext. : C 2low high K + ext. Prediction for the mutant SKOR-M286L The SKOR-mutation M286 L eliminates the interactive pore-S6 forces. The stabilised closed state C 2high at high K + ext. does not exist anymore. At high K + ext. the channel remains in state C 1. In contrast, C 2low at low K + ext. (low-K + pore structure) still exists. As a consequence, the channel SKOR-M286L appears to be K + ext. -activated.
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Supplemental Material, Johansson et al.SKOR-M286L: elimination of the K + -induced stabilisation of the closed state C 2high Number of open channels increases with increasing K + ext.
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The model explains mutant phenotypes: SKOR-D312N
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closed low K + ext. Supplemental Material, Johansson et al. Prediction for the mutant SKOR-D312N open high K + ext. high K + ext. : C 2high low K + ext. : C 2low The SKOR-mutation D312 N eliminates the interactive pore-S6 forces. The stabilised closed state C 2high at high K + ext. does not exist anymore. At high K + ext. the channel remains in state C 1. In contrast, C 2low at low K + ext. (low-K + pore structure) still exists. As a consequence, the channel SKOR-D312N appears to be K + ext. -activated.
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Supplemental Material, Johansson et al.SKOR-D312N: elimination of the K + -induced stabilisation of the closed state C 2high Number of open channels increases with increasing K + ext.
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Mathematical Appendix An Analytical Consideration of the Model
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The transitions O O* and C 2low C 1low are strongly energetically disfavoured. The only [K + ext. ]-dependent transition is C 1low C 1. d and a are voltage-dependent rate-constants. h 1, h 2, k d, k a, L, and r can be voltage-dependent or voltage-independent. Supplemental Material, Johansson et al.
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Experimentally accessible is p O : Some further simplifications of the equation:
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Supplemental Material, Johansson et al. Wild-type SKOR : Increasing [K + ] (=increasing x) decreasing p O Mutants SKOR-M286L and SKOR-D312N : p O increases with increasing [K + ] (=increasing x) Predictions for the K + -dependence at a fixed voltage
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