1. Chapter 16
The Cytoskeleton

2. Eucaryotic cells contain protein fibers that are involved in
establishing cell shape
providing mechanical strength
- cell movement
- chromosome separation
- intracellular transport of organelles

3. The self-assembly and dynamic structure of cytoskeletal filaments
Protein fibers form the cytoskeleton and there are 3 types
of these protein filaments:
- Actin filaments (also called microfilaments)
- Intermediate filaments
- Microtubules
In addition, a large number of accessory proteins, including
the motor proteins, are required for the properties associated
with each of these filaments
Each type of filament has distinct mechanical properties and
dynamics, but certain fundamental principles are common to
all.

4. Some functions of actin filaments are:
- to provide mechanical strength to the cell by forming a band under the plasma membrane
- link transmembrane proteins to cytoplasmic proteins
form contractile ring during cytokinesis in animal cells
cytoplasmic streaming
- generate locomotion in cells such as white blood cells and amoeba
- Interact with myosin to provide force of muscular contraction

5. Microtubules participate in a wide variety of cell activities
Microtubules participate in a wide variety of cell activities. Most involve motion that
is provided by protein “motors” that use ATP. They determine the positions of
membrane-enclosed organelles and direct intracellular transport. The migration of
chromosomes during mitosis and meiosis takes place on microtubules that make up
the spindle fibers.

6. Intermediate filaments provide mechanical strength and resistance to shear stress.
There are several types of intermediate filaments, each constructed from one or
more proteins characteristic of it.
Keratins are found in epithelial cells, hair and nails
Nuclear lamins form a meshwork that stabilizes the inner nuclear membrane
Neurofilaments strengthen the long axons of neurons
Vimentins provide mechanical strength to muscle and other cells

7. Nature 422, (17 April 2003)

8. Intermediate filaments

10. Defective keratins lead to the epidermolysis bullosa simplex disorder

11. The tubulin and actin subunits assemble head-to-tail to create polar filaments

12. The structure of a microtubule and its subunit

13. The structure of an actin monomer and actin filament

14. Microtubules and actin filaments have two distinct ends that grow at different rates

16. Nucleation is the rate-limiting step in the formation of a cytoskeletal polymer
The time course of actin polymerization in a test tube

17. hydrolysis by tubulin and actin
Filament treadmilling and dynamic instability are consequences of nucleotide
hydrolysis by tubulin and actin

18. Treadmilling occurs at intermediate concentrations of free subunits

19. Dynamic instability

20. Actin filaments

22. regulated by external signals
Actin filaments nucleate most frequently at the plasma membrane and nucleation is
regulated by external signals

23. Nucleation is catalyzed by a complex of proteins that include actin-related proteins (ARPs)
Differences on the sides and minus end prevent the ARPs from forming filaments on their own
or with actin.
Figure 16-34a Molecular Biology of the Cell (© Garland Science 2008)

24. Figure 16-34b Molecular Biology of the Cell (© Garland Science 2008)

25. The ARP complex nucleates actin filament growth from the
(-) end, allowing rapid elongation at the (+) end
The ARP complex can also attach to the side of another actin
filament while remaining bound to the (-) end of the filament
that it has nucleated

26. relative to the original filament
The ARP complex nucleates filaments more efficiently when it is bound to the side of a
preexisting actin filament resulting in a filament branch that grows at a 70° angle
relative to the original filament
Figure 16-34c Molecular Biology of the Cell (© Garland Science 2008)

27. binding site for an actin monomer.
Actin elongation is mediated by formins
Formation of actin bundles (as opposed to the gel-like branched actin networks) is induced by formins,
which are able to nucleate the growth of straight, unbranched filaments that can be cross-linked by
other proteins to form parallel bundles. Formins are dimeric proteins and each subunit has a
binding site for an actin monomer.
Figure Molecular Biology of the Cell (© Garland Science 2008)

28. Filament elongation is modified by proteins that bind to the
free subunits
Why does the soluble actin in cells not polymerized into filaments if the
concentration of soluble actin is high ( mM)?
Although the Cc of actin monomers is 0.1 mM, the actin is not polymerized
as it is bound to special proteins, such as thymosin. Actin monomers bound
to thymosin are locked where they cannot associate with either the (+) end
or (-) end of the actin filament.

29. How do cells recruit actin monomers from this sequestered pool and use
them for polymerization?
Recruitment depends on another monomer-binding protein profilin.
Profilin binds to the face of actin opposite the ATP-binding cleft.
Actin-profilin can bind to the plus end of the actin filament but is unable to
bind to the minus end.

30. Figure 16-37 Molecular Biology of the Cell (© Garland Science 2008)

31. Proteins that bind to the sides of actin filaments can either
stabilize or destabilize them
Tropomyosin stabilizes actin filaments by binding simultaneously
to seven adjacent actin subunits in one protofilament This prevents
other proteins from binding to actin
Cofilin destabilizes actin filaments by forcing it to twist a little
more tightly

33. Cross-linking proteins organize assemblies of actin filaments

35. Bundling and gel-forming proteins

38. Polymerization of tubulin nucleated by g-tubulin ring complexes
Figure Molecular Biology of the Cell (© Garland Science 2008)

39. Figure 16-30a Molecular Biology of the Cell (© Garland Science 2008)

40. The centrosome
Cell polarity including the organization of cell organelles, direction of membrane
trafficking, and orientation of microtubules is determined by microtubule-organizing
centers (MTOCs).
Figure 16-30b Molecular Biology of the Cell (© Garland Science 2008)

41. Microtubule-binding proteins (MAPs) organize microtubules and affect their
stability. Some MAPs prevent or promote cytosolic microtubule polymerization;
other MAPs organize microtubules into bundles or cross-link them to membranes
and intermediate filaments or both.

42. tau-green
MAP2-orange
Figure Molecular Biology of the Cell (© Garland Science 2008)

43. Figure 16-41 Molecular Biology of the Cell (© Garland Science 2008)

44. Figure 16-44 Molecular Biology of the Cell (© Garland Science 2008)

46. Actin-based motor proteins are members of the myosin superfamily
Myosin II

47. The myosin II bipolar thick filament

48. Direct evidence for the motor activity of the myosin head

49. Comparison of the domain structure of the heavy chains of some myosin types
Myosin VI is unique in moving towards the minus end of an actin filament

50. Kinesin and kinesin-related proteins

51. The structural similarity of myosin and kinesin indicates a common evolutionary origin

52. Dyneins are a family of minus-end directed microtubule motors
They are composed of two or three heavy chains (that include the motor domain) and
a variable number of light chains
Two major families of dyneins – cytoplasmic dyneins and axonemal dyneins
Cytoplasmic dyneins found in all eucaryotic cells – important for vesicle trafficking and
localization of the Golgi apparatus near the center of the cell
Axonemal dyneins are highly specialized for rapid and efficient sliding movement of
microtubules that drive the beating of cilia and flagella

53. Dynein requires the presence of a large number of accessory proteins
to associate with membrane-enclosed organelles

54. Homologs of the eucaryotic cytoskeleton in bacteria