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The Species 2000 Protocols for a Distributed System by Yuri Roskov, Species 2000 Secretariat 20th International CODATA Conference, Session K2, 25 October.

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Presentation on theme: "The Species 2000 Protocols for a Distributed System by Yuri Roskov, Species 2000 Secretariat 20th International CODATA Conference, Session K2, 25 October."— Presentation transcript:

1 The Species 2000 Protocols for a Distributed System by Yuri Roskov, Species 2000 Secretariat 20th International CODATA Conference, Session K2, 25 October 2006, Beijing

2 Species 2000 is a federation of taxonomic databases around the world We are working in partnership with ITIS (Integrated Taxonomic Information System, N America) on the Catalogue of Life Catalogue of Life is a taxonomic checklist of all know species of the Earth

3 20th International CODATA Conference, Session K2, 25 October 2006, Beijing The Catalogue of Life is available as Dynamic Checklist is an array of on-line taxonomic databases which linked to the common access system operated by SPICE software Annual Checklist is a fixed assembly of taxonomic databases as an annual edition of single database on CD and in the web

4 20th International CODATA Conference, Session K2, 25 October 2006, Beijing Dynamic Checklist (2006) www.sp2000.orgwww.sp2000.org or http://spice.sp2000.orghttp://spice.sp2000.org 26 databases (including European Hub) covers 450.000 species Annual Checklist (2006) www.sp2000.orgwww.sp2000.org or http://annual.sp2000.org/2006http://annual.sp2000.org/2006 37 global species databases covers 880.000 species (over 1.050.000 in 2007)

5 20th International CODATA Conference, Session K2, 25 October 2006, Beijing Standard Dataset, version 3.2 of December 2004 is available at www.sp2000.orgwww.sp2000.org The standard dataset has described 10 field groups related to each species: 1. Accepted scientific name linked to References, 2. Synonym(s) linked to Reference(s), 3. Common name(s) linked to Reference(s) 4. Latest taxonomic scrutiny 5. Database title 6. Additional data/Comments 7. Family name 8. Classification above family up to highest taxon 9. Distribution data 10. Reference(s)

6 20th International CODATA Conference, Session K2, 25 October 2006, Beijing Roadmap to database connection 1. Collecting metadata on each database via Sp2000 Questionnaire 2. Open on-line access to the database 3. Peer review process: 3 independent taxonomic reviews plus technical report by the Secretariat 4. Joining Species 2000 (membership of the international project) 5. Access agreement (permission for Species 2000 to include data into the Catalogue of Life)

7 20th International CODATA Conference, Session K2, 25 October 2006, Beijing Roadmap to database connection for Dynamic Checklist 6. Connection to one of the Species 2000 hubs via SPICE wrapper (incl. mapping fields and wrapper programming) 7. Testing the connection to the hub (technical tests & content verification) for Annual Checklist 8. Download from individual databases for the Annual Checklist assembly

8 20th International CODATA Conference, Session K2, 25 October 2006, Beijing GSD1 GSD4 GSD3 GSD2 SPICE cache wrapper Dynamic Checklist connection, Architecture # 1 interface

9 Annual Checklist assembly (present procedure) Luvie Paglinawan, Philippines Annual Checklist

10 ITIS: North American species Annual Checklist assembly (present procedure)

11 Scarabaeidae DB AlgaeBase ILDIS ITIS: North American species Global Species Databases Parhost Annual Checklist assembly (present procedure)

12 Scarabaeidae DB AlgaeBase ILDIS ITIS: North American species Global Species Databases Parhost Annual Checklist assembly (present procedure)

13 ITIS: North American species Global Species Databases Scarabaeidae DB AlgaeBaseILDIS Parhost The Annual Checklist 2006 Annual Checklist assembly (present procedure)

14 ITIS: North American species Global Species Databases Scarabaeidae DB AlgaeBaseILDIS Parhost The Annual Checklist 2006 Annual Checklist assembly (present procedure)

15 ITIS: North American species Global Species Databases Scarabaeidae DB AlgaeBaseILDIS Parhost The Annual Checklist 2007 Annual Checklist assembly (present procedure) Scarabaeidae DB AlgaeBase ILDIS Parhost RBG Checklist WTaxa SysMyr ChiloBase

16 Catalogue of Life classification GSD internal classification CoL Management classification Points of connection

17 20th International CODATA Conference, Session K2, 25 October 2006, Beijing ITIS EuroHub Species 2000: Architecture # 2 Regional hubs around the World EuroHub ChinaHub

18 Thank you! y.roskov@reading.ac.uk School of Biological Sciences Plant Sciences Building The University of Reading Reading RG6 6AS, United Kingdom

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