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Published byDerrick Green Modified over 9 years ago
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Discussion on Strategies Introductory Notes - omega vs. phi scans - beam polarization - single sweep vs. multi sweep - xtal shape as re-orientation/re-centering factor
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Reconstruction of the mean reflection intensities using limited experimental data set: profiles – a feature of PROTEINS, NOT APPLICABLE TO SMALL MOLECULES
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Optimization target: Signal/Noise NOT the time to be spent for experiment, number of frames to collect, etc … ALL the data collection parameters (multi- sub-wedge, variable exposure time, etc.) are optimized simultaneously - Example: multiplicity vs exposure time
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Radiation Damage - Compensation of intensity decay by adjusting (increasing) the exposure time / frame is essential : Total dose per data set is not important –defined by the long exposure of the LAST frames –short exposures of the FIRST frames are critical
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What works in BEST now? optimal orientation with respect to: Overlaps (~90% of failing experiments – J. Holton ) - also with isometric cells @ high mosaicity Intrinsic diffraction anisotropy each diffraction pattern is maximally isotropic, S/N in a weak direction compensated by exposure (small effect when judged by standard "resolution shell" statistics) Low noise in anomalous difference data anomalous difference error model (radiation induced non-isomorphism) accounts for the difference in dose between the observed Bijvoet mates
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Minimal R Friedel = - |> vs. Resolution and Orientation (error contribution to the difference only, no anomalous scattering contribution
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Data collection using multiple crystals Reference images Auto-indexing BEST Crystal characterization and ranking Determination of maximal achievable resolution Optimal crystal orientation(s) Experimental aim Crystal 3 Crystal 5 Crystal 1 Crystal 8 D.C. plan Completeness 23% Completeness 58% Completeness 91% Completeness 99.7%
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Omega vs. Phi scans Omega scans - orientation wrt scan axis is optimized Overlaps Radiation-induced non-isomorphism Multi-crystals AAS Phi scans - orientation wrt BEAM (direction/electric field vector) is varied "true redundancy" (– no advantage wrt. Omega, but - may be - less limitations) Blind region reduction ( - when in a symmetric setting) AAS?
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Beam polarization Isotropic scattering – Scan axis || Electic Filed vector is optimal, though only important at high resolution ( < 2*wavelength) Vertical OMEGA is of advantage for the microbeam (gravity) PHI is mechanically non-micro AAS BEST minimizes the noise in anomalous diffrence data (fully applicable to AAS data) the target describing the AAS signal is required
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Single Sweep vs. Multi Sweep Multi sweep on a single crystal: Blind region completion Multiplicity Partial data set completion (disaster scenario) From the point of view of implementation in BEST, Multi- Sweep strategy is a particular case of multiple crystal data collection optimization with the goniometric limitations
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Single Sweep vs. Multi Sweep "Fast" coverage of an asymmetric unit on a single crystal – no advantage in signal-to-noise! Single sweep Radiation damage Disadvantage – Inhomogeneous S/N Single sweep RD compensation Multiple sweeps
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xtal shape as re-orientation/re- centering factor Exploiting ALL of the crystal volume is critically important Severe mismatch of Xtal/Beam size – major limitation to sample characterization, strategy and data quality in general Use Kappa to match the Xtal/Beam size (at least in a vertical direction), Simplify line scans along Omega
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