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Nomenclature. Reactions  Substrates (reactants) -- A B C D  Products -- P Q R S  Enzyme -- E F G  Inhibitors -- I J  Activators  Metal ion -- M.

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Presentation on theme: "Nomenclature. Reactions  Substrates (reactants) -- A B C D  Products -- P Q R S  Enzyme -- E F G  Inhibitors -- I J  Activators  Metal ion -- M."— Presentation transcript:

1 Nomenclature

2 Reactions  Substrates (reactants) -- A B C D  Products -- P Q R S  Enzyme -- E F G  Inhibitors -- I J  Activators  Metal ion -- M n+/-  Other -- X Y Z  Substrates (reactants) -- A B C D  Products -- P Q R S  Enzyme -- E F G  Inhibitors -- I J  Activators  Metal ion -- M n+/-  Other -- X Y Z

3 Enzymes  Stable: when isolated from the rest of the reaction components, it has a long half-life with respect to the assay times scale, and reactants add to it in a bimolecular step.  Transitory: when isolated from the rest of the reaction components its half-life is short relative to the assay time scale.  Central: if the active site is completely filled and kinetically competent  Noncentral: if not.  Stable: when isolated from the rest of the reaction components, it has a long half-life with respect to the assay times scale, and reactants add to it in a bimolecular step.  Transitory: when isolated from the rest of the reaction components its half-life is short relative to the assay time scale.  Central: if the active site is completely filled and kinetically competent  Noncentral: if not.

4 Kinetic Mechanism  Sequential: all reactants must be bound to an enzyme before any reaction occurs.  Ping-Pong: a product is released between the addition of two substrates  Ordered: there is an obligatory order fo addition of reactants to an enzyme and /or release of products from enzyme.  Random: there is not.  Sequential: all reactants must be bound to an enzyme before any reaction occurs.  Ping-Pong: a product is released between the addition of two substrates  Ordered: there is an obligatory order fo addition of reactants to an enzyme and /or release of products from enzyme.  Random: there is not.

5 Kinetic Constants  Michaelis constant (Km) is defined as the concentration of reactant that gives half the maximum rate at saturating concentrations of all other reactants and with products maintained at zero concentration.

6 Rate Constants  Microscopic: associated rate constants of the individual steps in a reaction scheme  First-order  Second-order  Macroscopic:  Microscopic: associated rate constants of the individual steps in a reaction scheme  First-order  Second-order  Macroscopic:

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12 Michaelis-Menten


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