Presentation is loading. Please wait.

Presentation is loading. Please wait.

Introduction of Project Accelerating Viterbi Algorithm 20120306 Pei-Ching Li.

Published byShavonne Riley Modified over 9 years ago

Similar presentations

Presentation on theme: "Introduction of Project Accelerating Viterbi Algorithm 20120306 Pei-Ching Li."— Presentation transcript:

1 Introduction of Project Accelerating Viterbi Algorithm 20120306 Pei-Ching Li

2 Outline Introduction of Viterbi Algorithm Example Reference

3 Introduction of Viterbi Algorithm a dynamic programming algorithm for finding the most likely sequence of hidden states called the Viterbi path. Hidden Markov Model

4 Example O = Walk->Walk->Shop->Clean

5 Example O = Walk->Walk->Shop->Clean

6 Example O = Walk->Walk->Shop->Clean

7 Example O = Walk->Walk->Shop->Clean

8 Example O = Walk->Walk->Shop->Clean S = Sunny->Sunny->Rainy->Rainy

9 Reference CSE551 Final Project: Parallel Viterbi on a GPU – Authors: Seong Jae Lee, Miro Enev – Provenance: Autumm 2009, University of Washington

10 Reference A tile-based parallel Viterbi algorithm for biological sequence alignment on GPU with CUDA – Published: Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW), 2011 IEEE International Symposium – Authors: Zhihui Du, Zhaoming Yin, and David A. Bader – References Cited: 25

Download ppt "Introduction of Project Accelerating Viterbi Algorithm 20120306 Pei-Ching Li."

Similar presentations

Enhance the Understanding of Whole-Genome Evolution by Designing, Accelerating and Parallelizing Phylogenetic Algorithms Zhaoming Yin Advisor: David A.

Enhance the Understanding of Whole-Genome Evolution by Designing, Accelerating and Parallelizing Phylogenetic Algorithms Zhaoming Yin Advisor: David A.
Accelerating Viterbi Algorithm 20120814 Pei-Ching Li.

Accelerating Viterbi Algorithm Pei-Ching Li.
Chapter 15 Probabilistic Reasoning over Time. Chapter 15, Sections 1-5 Outline Time and uncertainty Inference: ltering, prediction, smoothing Hidden Markov.

Chapter 15 Probabilistic Reasoning over Time. Chapter 15, Sections 1-5 Outline Time and uncertainty Inference: ltering, prediction, smoothing Hidden Markov.
Profile Hidden Markov Models Bioinformatics Fall-2004 Dr Webb Miller and Dr Claude Depamphilis Dhiraj Joshi Department of Computer Science and Engineering.

Profile Hidden Markov Models Bioinformatics Fall-2004 Dr Webb Miller and Dr Claude Depamphilis Dhiraj Joshi Department of Computer Science and Engineering.
1 Profile Hidden Markov Models For Protein Structure Prediction Colin Cherry

1 Profile Hidden Markov Models For Protein Structure Prediction Colin Cherry
2004/11/161 A Tutorial on Hidden Markov Models and Selected Applications in Speech Recognition LAWRENCE R. RABINER, FELLOW, IEEE Presented by: Chi-Chun.

2004/11/161 A Tutorial on Hidden Markov Models and Selected Applications in Speech Recognition LAWRENCE R. RABINER, FELLOW, IEEE Presented by: Chi-Chun.
Patterns, Profiles, and Multiple Alignment.

Patterns, Profiles, and Multiple Alignment.
Introduction BNFO 602 Usman Roshan. Course grade Project: –Find a bioinformatics topic by Feb 5th. This can be a paper or a research question you wish.

Introduction BNFO 602 Usman Roshan. Course grade Project: –Find a bioinformatics topic by Feb 5th. This can be a paper or a research question you wish.
Weekly Report Ph.D. Student: Leo Lee date: Oct. 9, 2009.

Weekly Report Ph.D. Student: Leo Lee date: Oct. 9, 2009.
Hidden Markov Model 11/28/07. Bayes Rule The posterior distribution Select k with the largest posterior distribution. Minimizes the average misclassification.

Hidden Markov Model 11/28/07. Bayes Rule The posterior distribution Select k with the largest posterior distribution. Minimizes the average misclassification.
Hidden Markov Models Pairwise Alignments. Hidden Markov Models Finite state automata with multiple states as a convenient description of complex dynamic.

Hidden Markov Models Pairwise Alignments. Hidden Markov Models Finite state automata with multiple states as a convenient description of complex dynamic.
Slide 1 EE3J2 Data Mining EE3J2 Data Mining Lecture 14: Introduction to Hidden Markov Models Martin Russell.

Slide 1 EE3J2 Data Mining EE3J2 Data Mining Lecture 14: Introduction to Hidden Markov Models Martin Russell.
Part 4 b Forward-Backward Algorithm & Viterbi Algorithm CSE717, SPRING 2008 CUBS, Univ at Buffalo.

Part 4 b Forward-Backward Algorithm & Viterbi Algorithm CSE717, SPRING 2008 CUBS, Univ at Buffalo.
1 Fast Packet Classification using Group Bit Vector Author: Tong Liu, Huawei Li, Xiaowei Li, Yinhe Han Publisher: IEEE GLOBECOM 2006 Presenter: Hsin-Mao.

1 Fast Packet Classification using Group Bit Vector Author: Tong Liu, Huawei Li, Xiaowei Li, Yinhe Han Publisher: IEEE GLOBECOM 2006 Presenter: Hsin-Mao.
Profile-profile alignment using hidden Markov models Wing Wong.

Profile-profile alignment using hidden Markov models Wing Wong.
Weekly Report Start learning GPU Ph.D. Student: Leo Lee date: Sep. 18, 2009.

Weekly Report Start learning GPU Ph.D. Student: Leo Lee date: Sep. 18, 2009.
Lyle Ungar, University of Pennsylvania Hidden Markov Models.

Lyle Ungar, University of Pennsylvania Hidden Markov Models.
Hidden Markov Models: an Introduction by Rachel Karchin.

Hidden Markov Models: an Introduction by Rachel Karchin.
11 FPGA based High speed and low area cost pattern matching Authors: Jian Huang, Zongkai Yang, Xu Du, and Wei Liu Publisher: Proceedings of IEEE Symposium.

11 FPGA based High speed and low area cost pattern matching Authors: Jian Huang, Zongkai Yang, Xu Du, and Wei Liu Publisher: Proceedings of IEEE Symposium.
. Class 5: HMMs and Profile HMMs. Review of HMM u Hidden Markov Models l Probabilistic models of sequences u Consist of two parts: l Hidden states These.

. Class 5: HMMs and Profile HMMs. Review of HMM u Hidden Markov Models l Probabilistic models of sequences u Consist of two parts: l Hidden states These.

Similar presentations

Ads by Google