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Ocean Biodiversity Information – 29/11-1/12/20041 European Register of Marine Species version 2.0 data management, current status and plans for the future.

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Presentation on theme: "Ocean Biodiversity Information – 29/11-1/12/20041 European Register of Marine Species version 2.0 data management, current status and plans for the future."— Presentation transcript:

1 Ocean Biodiversity Information – 29/11-1/12/20041 European Register of Marine Species version 2.0 data management, current status and plans for the future Edward Vanden Berghe, Philippe Bouchet, Geoff Boxshall, Mark Costello, Chris Emblow

2 Ocean Biodiversity Information – 29/11-1/12/20042 ERMS overview European Register of Marine Species Result of EU project, 10 partners Managed by SMEBD Will form taxonomic backbone of EurOBIS and MarBEF data management Will be updated

3 Ocean Biodiversity Information – 29/11-1/12/20043 ERMS v 1.0 EU project (MAST) 2 years: 1998-1999 19 contractual partners responsible for data management, promotion of the product, dialogue with end users… 100+ editors of taxonomic lists not necessarily from the partner institutions responsible for the content

4 Ocean Biodiversity Information – 29/11-1/12/20044 ERMS v 1.0 content List of names Synonymy for some groups Very limited distribution information level of major sea area (Atlantic, Mediterranean,…) very incomplete

5 Ocean Biodiversity Information – 29/11-1/12/20045 ERMS geographic scope

6 Ocean Biodiversity Information – 29/11-1/12/20046 ERMS taxonomic scope Multicellular organisms Animals, plants, macroorganisms Protoctista not part of the original plan Gaps exist

7 Ocean Biodiversity Information – 29/11-1/12/20047 ERMS statistics all taxa species valid Biota 47319 32996 29862 Animalia 38378 26540 24352 Mollusca 4899 3343 3343 Platyhelm.3696 2427 2427 Arthropoda 11221 8007 7436 Fungi 597 332 331 Plantae 19 6 6 Protoctista 7737 5658 4713

8 Ocean Biodiversity Information – 29/11-1/12/20048 ERMS v 1.0 availability

9 Ocean Biodiversity Information – 29/11-1/12/20049 ERMS v 1.0 weaknesses Taxonomic gaps Set of excel sheets, no proper database Checklists, some created from scratch, some compilations of existing regional lists No hierarchy Detail available varies across checklists distribution info, synonymy, literature… No integration between checklists Programme-based, no continuation

10 Ocean Biodiversity Information – 29/11-1/12/200410 SMEBD Society for the Management of European Biodiversity Data All data contributors are members of the society Society manages intellectual property right on behalf of authors ERMS authors, discussions to include also Fauna Europaea authors

11 Ocean Biodiversity Information – 29/11-1/12/200411 MarBEF Marine Biodiversity and Ecosystem Functioning EU FP 6 ‘Network of Excellence’ VLIZ does data management Needed taxonomic authority list for integration of databases EurOBIS SMEBD gave mandate to VLIZ/MarBEF to manage data

12 Ocean Biodiversity Information – 29/11-1/12/200412 ERMS v 1.1 Integrating spreadsheets in one relational database MS SQL Server, front end Access Structure is open hierarchy (± ITIS) Content remains same as ERMS 1.0 some inconsistencies removed But adding taxonomic hierarchy

13 Ocean Biodiversity Information – 29/11-1/12/200413 ERMS v 1.1 structure

14 Ocean Biodiversity Information – 29/11-1/12/200414 ERMS v 1.1 availability

15 Ocean Biodiversity Information – 29/11-1/12/200415 ERMS v 2.0 Content will be updated through web interface snapshot frozen and archived at regular intervals Structure revised to allow audit trail who did what, when Taxon editors have been invited Extra information (not strictly ERMS) Feeding types, distribution info (country), trophic level, biomass…

16 Ocean Biodiversity Information – 29/11-1/12/200416 ERMS v 2.0 editorial structure ERMS Editorial committee Arvanitides, Bouchet, Boxshall, Costello (chair), Emblow, Vanden Berghe (db) responsible for management Associate editors (‘Group coordinators’ of FE) responsible for part of taxonomic tree have edit rights through web site Review editors (‘Validation’ of FE) assist associate editors

17 Ocean Biodiversity Information – 29/11-1/12/200417 ERMS v 2.0 db structure

18 Ocean Biodiversity Information – 29/11-1/12/200418 ERMS future Species 2000 Europa member ‘EuroHub’ for Species 2000, together with Fauna Europaea and Euro+Med PlantBase Through dynamic link distributed system Spice protocol developed under Species 2000 Europa possible alternatives are DiGIR and BioCASe Contribution to global systems ITIS URMO


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